Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30351.Seq
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.2  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    27   4.2  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   4.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.7  

>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 485 GIPVIRPLMMESTALGAAIVAGRAMRVW 402
           GIP+I P+      L  A+ + RA ++W
Sbjct: 131 GIPIIDPVTRAPAVLAGAVSSSRAKQMW 158


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 290 WTDTKNEHVNAENQIELLQFCRRDFFSSEPPY 195
           W +T+N   +  N +E+L    R+   S P Y
Sbjct: 764 WANTENARYSTSNALEILDMLLREKIESAPRY 795


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
 Frame = +1

Query: 388 GIVVGHTRIARPATMAAPRAVLSIMRGRMTGIPSKSACICT------ELSS-APSLRRRG 546
           G++VG+T + RP T+ +   V     G ++G P K   + T       LSS  P +   G
Sbjct: 330 GVIVGNTTVQRPKTLKSTSHVEE--TGGLSGPPLKPIALNTLRTLRKHLSSDIPIIGCGG 387

Query: 547 VASGARSLQPSR 582
           ++SG  +++ +R
Sbjct: 388 ISSGKDAIEYAR 399


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 667 LSRKDSTF-SILSRARRWRPVCHQT 596
           LSRK + F   LSR+ +WRPV ++T
Sbjct: 72  LSRKATRFYRWLSRSLKWRPVTYET 96


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 553 RQLLADGGMAQNSVLCRCRLIYWVYQSFVPS*WK 452
           +++ +D   +Q +V  R  L+ W++ S  PS WK
Sbjct: 162 QRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNWK 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,958
Number of Sequences: 5004
Number of extensions: 64713
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)