Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30351.Seq
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)                    46   5e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)                   46   5e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   5e-05
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    30   2.6  
SB_25843| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)                   29   4.5  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
          Length = 85

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
          Length = 137

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 25  MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62


>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
           +Q+QAD+LGI V RP M E+TALGAA+ AG A  + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 476  LVYPVNQPASAQN*VLRH-PSVGEELPQGRAVCSHRVRHGARLVTHGPPAAGPGQYA 643
            L+YP+   A      L H P+     P   A C + +RH A  + H PP A    YA
Sbjct: 1038 LIYPIRHRALH----LPHTPARAASTPYATACCIYPIRHRALHLPHTPPHAASTPYA 1090



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 530  PSVGEELPQGRAVCSHRVRHGARLVTHGPPAAGPGQYAERRV 655
            P      P   A+C + +RH A  + H PP A    YA  R+
Sbjct: 941  PPHATSTPYATALCIYPIRHRALHLPHTPPHAASTSYATVRL 982


>SB_25843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 620 LEARVSPDARRGGRDGCRLRAPEATPRRRRDGAELSSVQ 504
           +EAR + DA +      RL   E   RRR  GAE   ++
Sbjct: 1   MEAREANDANKASNSAPRLSGSERNKRRREKGAESQRIE 39


>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
           +++ + L G  + RP   + + LGAA +AG A  VW
Sbjct: 21  MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56


>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
          Length = 584

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +1

Query: 502 ICTELSSAPSLRRRGVASGARSLQPSRPPRRASGDTRASSGGPWTIC*TSSPFGS 666
           +C+     PS     V SG+R+  P+ P   AS  +   SGGP       SP GS
Sbjct: 313 VCSANGETPSPMLTSVGSGSRTGSPAAPTNAASA-SPGKSGGPEE---RQSPMGS 363


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 363 QECIGRW--AGYCRGPHTHCATC 425
           QEC+GRW  A + RG H  C  C
Sbjct: 26  QECLGRWNVAQFFRGRHPTCPHC 48


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 508  TELSSAPSLRRRGVASGARSLQPSRPP 588
            T L++ PS R+ G +S A++ +PS PP
Sbjct: 3156 TVLTTLPSSRQAGTSSTAKATRPSVPP 3182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,452,398
Number of Sequences: 59808
Number of extensions: 557043
Number of successful extensions: 1358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)