Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30348.Seq
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   131   9e-32
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   128   1e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.14 
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    27   3.0  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   6.9  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   6.9  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   9.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  131 bits (317), Expect = 9e-32
 Identities = 75/146 (51%), Positives = 94/146 (64%), Gaps = 9/146 (6%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           PADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRAD 133

Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCXHVKC*GFVVCXP 612
            Q I EAS+VNIPVIALC+TDS      +L+H   ++P   +   G   +    +++   
Sbjct: 134 AQAIKEASFVNIPVIALCDTDS------ILNHVDVAIP---INNKGYKSIGLAWYLLARE 184

Query: 613 X---------TSGXDVVVDLFFYREP 663
                     T+  +V+ DL+FYR+P
Sbjct: 185 VLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 36/65 (55%), Positives = 51/65 (78%)
 Frame = +2

Query: 62  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 241
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 242 AIENP 256
            IENP
Sbjct: 70  TIENP 74



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 510 VDIAIPCNTKSSHSIGLMWWLXAREVLRLRG 602
           VD+AIP N K   SIGL W+L AREVLRLRG
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  128 bits (308), Expect = 1e-30
 Identities = 63/99 (63%), Positives = 75/99 (75%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRAD 132

Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPT 549
            Q I EAS+VNIPVIALC+TDS      +L+H   ++PT
Sbjct: 133 AQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165



 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 35/69 (50%), Positives = 53/69 (76%)
 Frame = +2

Query: 50  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 229
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 230 RAVVAIENP 256
           R +  IENP
Sbjct: 65  RVIATIENP 73



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 22/31 (70%), Positives = 25/31 (80%)
 Frame = +3

Query: 510 VDIAIPCNTKSSHSIGLMWWLXAREVLRLRG 602
           VDIAIP N K   SIGL+W+L AREVLR+RG
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRG 189


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 397 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWT 516
           P L+++L+P ++     EA   ++P I + +TD+  R+ T
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVT 219


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 418 DPAQDHQPITEASYV--NIPVIALCNTDSPLRLWTLLS 525
           D   DH PI    +   ++   A C  DS +R+W L++
Sbjct: 13  DANDDHTPIYSVDFQKNSLNKFATCGGDSKIRIWQLIT 50


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 447 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP 280
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 268 RTHQRVLDGYDSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 131
           RT   +    DSTS    NK+  G   V  +   S S  DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 265 THQRVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVN 131
           T Q ++D  D+   +  +    T V+HMG+     +D G++   N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 646 TNQPQHPSRWXTGNTPRSL 590
           +NQ  HP+ W   N P+S+
Sbjct: 343 SNQQNHPAAWNPDNKPQSI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,984
Number of Sequences: 5004
Number of extensions: 70103
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)