Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30348.Seq
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 128 6e-30
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 128 6e-30
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 30 2.4
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.4
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.4
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 5.4
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 7.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.2
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.5
01_01_0008 + 34743-34939,35027-35072,35517-35668,35818-35877,365... 28 9.5
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 128 bits (308), Expect = 6e-30
Identities = 71/141 (50%), Positives = 87/141 (61%), Gaps = 4/141 (2%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCXHVKC*GFVVCXP 612
HQPI E++ NIP IA C+TDSP+R + A + GC V+
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSI----GCLFWLLARMVLQMR 190
Query: 613 XT----SGXDVVVDLFFYREP 663
T DV+VDLFFYR+P
Sbjct: 191 GTILPGHKWDVMVDLFFYRDP 211
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +2
Query: 65 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 245 IENP 256
IENP
Sbjct: 72 IENP 75
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLXAREVLRLRG 602
P + VDI IP N K SIG ++WL AR VL++RG
Sbjct: 157 PMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 128 bits (308), Expect = 6e-30
Identities = 71/141 (50%), Positives = 87/141 (61%), Gaps = 4/141 (2%)
Frame = +1
Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
P D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCXHVKC*GFVVCXP 612
HQPI E++ NIP IA C+TDSP+R + A + GC V+
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSI----GCLFWLLARMVLQMR 190
Query: 613 XT----SGXDVVVDLFFYREP 663
T DV+VDLFFYR+P
Sbjct: 191 GTILPGHKWDVMVDLFFYRDP 211
Score = 95.5 bits (227), Expect = 4e-20
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +2
Query: 32 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 211
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 212 KLVLAARAVVAIENP 256
KL LAAR +VAIENP
Sbjct: 61 KLQLAARVIVAIENP 75
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLXAREVLRLRG 602
P + VDI IP N K +SIG ++WL AR VL++RG
Sbjct: 157 PMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRG 191
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 208 GKTCSGCSCCRSHREPA-DVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQA 384
G+ SGC CR D ++ R RAV AA + P R+TPG +
Sbjct: 54 GRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHSQAR 113
Query: 385 AFREPRLLIVLD 420
RE IV D
Sbjct: 114 LVREMMKSIVAD 125
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 132 TFSAPRWVVAASILVTSSSLRASTSNP 52
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 309 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 416
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = -3
Query: 545 GRLGVAWDSNVHNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAW 378
G AW SN ++ SG S + I G+ + S G WS AGSNT G+ ++ W
Sbjct: 410 GSYSSAW-SNSNSNSG-STMPSGI-GVASNAGSSSGSWSNAGSNTGTLSGAGSSNW 462
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 319 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 492
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 493 DSPLRL 510
+ P+++
Sbjct: 330 EQPMQI 335
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 139 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 246
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 175 WYPCDQLASYLGKTCSGCSCCRSHREP 255
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>01_01_0008 +
34743-34939,35027-35072,35517-35668,35818-35877,
36594-36818,36892-37033,37276-37326,37434-37525,
38319-38445,38670-38751,38939-39046,39135-39189,
39456-39602,39703-39781,39885-40007
Length = 561
Score = 27.9 bits (59), Expect = 9.5
Identities = 31/116 (26%), Positives = 47/116 (40%)
Frame = -1
Query: 721 LVPXALSLGFVCXPF*XFFRVHGRRTNQPQHPSRWXTGNTPRSLSTSRANNHHIKPIEWE 542
++P A LG+ PF F V G T+ ++ G P+ S NH I+ I W
Sbjct: 314 VLPFARKLGYPIPPF--DFCVKGV-TSISTDVHKY--GLAPKGTSIVLYKNHEIRKISW- 367
Query: 541 DLVLHGIAMSTILVGSLCCTKQSQEC*HMKLQ*WVDGLVQGPIQSRDEVHGMQLGS 374
L LH T ++ CTK ++ + W GL P + G+ G+
Sbjct: 368 -LSLHNYYSLTDMIMLQNCTKMFKQ-----VTEWTGGLYVSPTIAGSRPGGLIAGA 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,718,489
Number of Sequences: 37544
Number of extensions: 521840
Number of successful extensions: 1302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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