Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30348.Seq
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               160   1e-39
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.0  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   4.2  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   4.2  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           28   7.3  
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  160 bits (389), Expect = 1e-39
 Identities = 73/85 (85%), Positives = 79/85 (92%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           PADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  D
Sbjct: 71  PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRID 130

Query: 433 HQPITEASYVNIPVIALCNTDSPLR 507
           HQP+TEASYVNIPVIA CNTDSPLR
Sbjct: 131 HQPVTEASYVNIPVIAFCNTDSPLR 155



 Score =  109 bits (262), Expect = 2e-24
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +2

Query: 44  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 223
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 224 AARAVVAIENP 256
           AAR +V IENP
Sbjct: 61  AARIIVTIENP 71



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLXAREVLRLRG 602
           P + VD+AIPCN K  HSIGLM+WL AREVLR+RG
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRG 187


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 489  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 325
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 209 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 301
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 209 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 301
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 489 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 331
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 489 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 331
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 415 LDPAQDHQPITEASYVNIPVIALCNTDSPLR 507
           LDP  +HQPIT+ +   I ++A   TD+PL+
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLK 146


>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 412 VLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTL 519
           +L PA+  QP+ E     + VI+ C     L LWTL
Sbjct: 399 LLLPAEFTQPVEEPQTEALEVISACLDQGNLGLWTL 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,992,243
Number of Sequences: 59808
Number of extensions: 594463
Number of successful extensions: 1461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)