Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30348.Seq
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   130   8e-31
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   125   4e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   120   8e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    33   0.28 
At2g22340.1 68415.m02651 hypothetical protein                          33   0.28 
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea...    31   0.85 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   2.0  
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea...    29   3.4  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    29   4.5  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  130 bits (315), Expect = 8e-31
 Identities = 72/141 (51%), Positives = 87/141 (61%), Gaps = 4/141 (2%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           P D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134

Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCXHVKC*GFVVCXP 612
           HQPI E +  NIP+IA C+TDSP+R   +   A       +    GC        V+   
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSI----GCLFWLLARMVLQMR 190

Query: 613 XT----SGXDVVVDLFFYREP 663
            T       DV+VDLFFYREP
Sbjct: 191 GTIAAGQKWDVMVDLFFYREP 211



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +2

Query: 65  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 244
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 245 IENP 256
           IENP
Sbjct: 72  IENP 75



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLXAREVLRLRGVXPVNQR 623
           P + VDI IP N K  HSIG ++WL AR VL++RG     Q+
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQK 198


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  125 bits (301), Expect = 4e-29
 Identities = 70/141 (49%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           P D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 433 HQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPSLPTLLV*CGGCXHVKC*GFVVCXP 612
           HQPI E +  NIP IA C+TDSP+    +   A       +    GC        V+   
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSI----GCLFWLLARMVLQMR 191

Query: 613 XT----SGXDVVVDLFFYREP 663
            T       DV+VDLFFYREP
Sbjct: 192 GTILAAQKWDVMVDLFFYREP 212



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +2

Query: 77  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLXAREVLRLRGVXPVNQR 623
           P   VDI IP N K  HSIG ++WL AR VL++RG     Q+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQK 199


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  120 bits (290), Expect = 8e-28
 Identities = 54/84 (64%), Positives = 64/84 (76%)
 Frame = +1

Query: 253 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 432
           P D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  D
Sbjct: 76  PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135

Query: 433 HQPITEASYVNIPVIALCNTDSPL 504
           HQPI E +  NIP IA C+TDSP+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPM 159



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +2

Query: 77  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 256
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +3

Query: 498 PTKIVDIAIPCNTKSSHSIGLMWWLXAREVLRLRGVXPVNQR 623
           P   VDI IP N K  HSIG ++WL AR VL++RG     Q+
Sbjct: 158 PMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQK 199


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 397 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRLWTLLSHATPS 540
           P  ++V D  +    I EAS + IPV+A+ + + PL  +  +++  P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 234
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats;  similar to
           PC326 protein  (GI:200241) (PIR2:S37694) [Mus
           musculus];Human (H326) translated mRNA - Homo sapiens,
           EMBL:HS06631
          Length = 481

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 454 SYVNIPVIALCNTDSPLRLWTLLSHATPSLP 546
           S+ +IP++A C  +  ++LWT +S+   SLP
Sbjct: 371 SHPHIPLLASCGIEKSVKLWTPMSNDVLSLP 401


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 352 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 453
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
           similarity to myosin heavy chain [Rana catesbeiana]
           GI:4249699; contains Pfam profile PF00787: PX domain
          Length = 755

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = +2

Query: 35  SATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 214
           S+++S  +++LA ++  +  ++A T  L  E    ++ +  ++    GT  +  +   E 
Sbjct: 647 SSSLSEAIELLATSDNRIGLLIAETQLLSEEVEKLKLTSGGHR----GTDDLVRKMLTEV 702

Query: 215 LVLAARAVVAIENPLMCSSSHHGPSV 292
           L+  AR    + + L CS S HG SV
Sbjct: 703 LIDNARLRKQVNSVLRCSLSGHGISV 728


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 551 RVGRLGVAWDSNVHNLSGESVL 486
           R GR+G  WD+NVH  +  S+L
Sbjct: 107 RSGRIGRCWDANVHRATCSSLL 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,726,856
Number of Sequences: 28952
Number of extensions: 395891
Number of successful extensions: 867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)