Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30347.Seq
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          122   2e-28
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   111   3e-25
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           72   3e-13
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.41 
11_01_0526 - 4140853-4141017,4141416-4141619                           28   5.1  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  122 bits (294), Expect = 2e-28
 Identities = 56/74 (75%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57  RSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEA 116

Query: 421 RRKHLGGKILGFFF 462
           RRK++GGK+LGFF+
Sbjct: 117 RRKNVGGKVLGFFY 130



 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/62 (75%), Positives = 58/62 (93%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  111 bits (267), Expect = 3e-25
 Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
 Frame = +1

Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
           +S +IVV L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57  RSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEA 116

Query: 421 RRKHLGGKIL 450
           RRK++GGK L
Sbjct: 117 RRKNVGGKEL 126



 Score =  105 bits (251), Expect = 3e-23
 Identities = 46/62 (74%), Positives = 58/62 (93%)
 Frame = +2

Query: 77  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 257 LL 262
           ++
Sbjct: 61  IV 62


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 30/70 (42%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = +1

Query: 253 QIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRK 429
           +I V L GR+  C  ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++
Sbjct: 59  KINVELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQ 118

Query: 430 HLGGKILGFF 459
           ++GG++LG+F
Sbjct: 119 NVGGQVLGYF 128



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 27/56 (48%), Positives = 42/56 (75%)
 Frame = +2

Query: 92  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGRL 259
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR G++
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 214  HRRV*NR**SQSWQIVVNLTGRLNKCGVISPRFDVPINDI 333
            HRR+      +S +I++   GRLNK GVIS R DV +  +
Sbjct: 906  HRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945


>11_01_0526 - 4140853-4141017,4141416-4141619
          Length = 122

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 280 LNKCGVISPRFDVPINDIERWT 345
           LNKCGVI+P     I+D+   T
Sbjct: 88  LNKCGVIAPNLPTKIDDLSHRT 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,236
Number of Sequences: 37544
Number of extensions: 233182
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)