Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30346.Seq
(850 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 24 1.5
DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein. 23 2.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 22 6.2
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 24.2 bits (50), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 15 CSSYFPQSGSFIITLVTFTKDK*Y 86
CS F QSG +I + T T +K Y
Sbjct: 181 CSKTFIQSGQLVIHMRTHTGEKPY 204
>DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein.
Length = 145
Score = 23.4 bits (48), Expect = 2.7
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = -2
Query: 426 SLLQGFLECHIAAHCFRRQSFNLVSFPAELGQFIDAFILYDGRVYIEANAVR---CPEQL 256
SLL L C + HC R SF A ++A G ++ AVR PE
Sbjct: 8 SLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVRNGQWPETR 67
Query: 255 RTVCW 241
+ C+
Sbjct: 68 QLKCY 72
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATV 382
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATV 382
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATV 382
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATV 382
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATV 382
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATV 382
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 428 NPPSGYIRSAFGTPISTGRPATV 450
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 811 NPSAGGLASAIGSPVPANHQALV 743
NP +G + SA G+P+ A V
Sbjct: 428 NPPSGYIRSAFGTPISTGRPATV 450
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 22.2 bits (45), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 533 RSHRISSFGRIQESNRTGR 589
RSHR S R Q SN+ R
Sbjct: 70 RSHRFKSLPRCQLSNKRDR 88
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,404
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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