Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30345.Seq
         (949 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.65 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   8.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   8.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   8.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   8.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   8.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   8.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 3   LIYFILVILL-LEYFVFLKHTFNITLLINHCILF 101
           L Y +L+ILL + YF +    F + LL+  CI +
Sbjct: 227 LFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYY 260



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 9   YFILVILLLEYFVFLKHTFNITLLINHCILFSLV 110
           Y  +++L + YF +    F + LL   CI + +V
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVV 138


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 862 SPXXGXRKGLKKDPVPNNSPXVHEPG 939
           SP       +  +P P  SP V EPG
Sbjct: 79  SPEPDPEIPVAPEPAPLASPLVQEPG 104


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 439 KFPCPKKMQINLTGFLNGKNAR-LSWE 516
           K+P    M+  L G   GKNA+ + W+
Sbjct: 444 KYPLIGAMREELRGISRGKNAKDVDWQ 470


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 6    IYFILVILLLEYFVFLKHTFNITLLINHCILFSLVCNQFDLSLASSRL 149
            ++F  +IL++++   L H F     I      +L C +    L+ + L
Sbjct: 1331 VFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCTKKKEELSPNAL 1378


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,465
Number of Sequences: 336
Number of extensions: 3574
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)