Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30345.Seq
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    51   3e-07
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    28   2.2  
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    27   2.9  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
 Frame = +1

Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
           Y G + EQ+                  +  +++  +K  ++VLKPWI  ++ E++  ED+
Sbjct: 5   YKGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDE 64

Query: 403 VVIEYVTNQLEEKFPC-------------PKKMQINLTGFL 486
           VVI +V   LEE                 P+K+Q+NLTGFL
Sbjct: 65  VVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFL 105



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +3

Query: 501 TPFMGELWELLLSAQASENGIPESFTQQKKEEIKK-RMXEQQNKDKDK 641
           T F  ELW L++SA  ++ GIPE F  +KKEEI K +   + +K++ K
Sbjct: 110 TAFTEELWSLIISASQNQYGIPEKFILEKKEEISKLKDRTEASKEESK 157


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 469 NLTGFLNGKNARLSWESYGSC 531
           NL  F+NGKN   S+  Y SC
Sbjct: 363 NLWSFVNGKNLTASYNGYTSC 383


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 534 LSAQASENGIPESFTQQKKEEIKKRMXEQQ 623
           +S  AS++G+ +   + K+EE+KK   E++
Sbjct: 1   MSTAASDSGVEKLVEENKREEVKKNEEEKE 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,592
Number of Sequences: 5004
Number of extensions: 62368
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)