Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30345.Seq
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900...    64   2e-10
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    33   0.44 

>03_02_0509 -
           9003330-9003446,9003587-9003673,9004113-9004280,
           9004835-9004957,9005081-9005170,9005275-9005295
          Length = 201

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +1

Query: 223 YTGTSTEQDXXXXXXXXXXXX--K*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNME 396
           + GTS +QD              K + E+  L  +T  K K+DV+KPWI  ++TE+L  E
Sbjct: 6   FRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDMT--KVKMDVMKPWIATRVTELLGFE 63

Query: 397 DDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLSWE 516
           D+V+I ++   LEEK    KK+QI LTGF+     +   E
Sbjct: 64  DEVLINFIYGLLEEKEADGKKIQIQLTGFMEKNTVKFMKE 103



 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 38/122 (31%), Positives = 57/122 (46%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
           FS+K+ KL+K  KF   L   VDM+KVK    +    ++                +    
Sbjct: 17  FSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDEVLINFIYGLLE 76

Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
            K    K+   QL    + K    FM ELW LLLSAQ + +G+P+ F   K+ EI+++  
Sbjct: 77  EKEADGKKIQIQLTGFME-KNTVKFMKELWSLLLSAQQNASGVPQQFLDAKEAEIQQKKA 135

Query: 615 EQ 620
           E+
Sbjct: 136 EE 137


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 349 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQI 468
           ++PWI +KI E L  E+  +++Y+ +  ++     K +++
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL 882


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,271,145
Number of Sequences: 37544
Number of extensions: 392919
Number of successful extensions: 972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)