Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30345.Seq
         (949 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   8e-17
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.8  
SB_54212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 85.0 bits (201), Expect = 8e-17
 Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
 Frame = +1

Query: 328 QK*KLDVLKPWITQKITEILNMEDDVVIEYVTNQLE-EKFPCPKKMQINLTGFLNGKNAR 504
           +K  LDVLKPWIT++IT++L  EDDVV+E+V N LE EK P PK MQIN+TGFL  KNAR
Sbjct: 2   EKINLDVLKPWITKRITDMLGFEDDVVLEFVFNMLESEKHPDPKVMQINITGFLQAKNAR 61

Query: 505 L 507
           +
Sbjct: 62  I 62



 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 30/62 (48%), Positives = 38/62 (61%)
 Frame = +3

Query: 438 KVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMXE 617
           K P PK     +    + K    FMGELWELL+SAQ +  GIP  F ++KKEEIK+R  E
Sbjct: 40  KHPDPKVMQINITGFLQAKNARIFMGELWELLVSAQENIGGIPTEFLEKKKEEIKQRKLE 99

Query: 618 QQ 623
           Q+
Sbjct: 100 QE 101


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -3

Query: 947  PPWPGSWTXGELFGTGSFFNPFLKPXXGDXXFRXHWELG 831
            PP+ GSW  G          P L P       R  WE G
Sbjct: 1950 PPYSGSWKRGNASNASDASGPILNPAPPRKAARNRWETG 1988


>SB_54212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 315 QVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA*RKVPM--PKENAD 467
           +++  +V  RR ++   + DN +S H     H   HQ A RKVP+  PK   D
Sbjct: 228 RINTIEVPRRRYKSQSRNYDNTHSTHTSNGTHQHVHQSAKRKVPVKAPKVRLD 280


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 420  HQPA*RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEI 599
            H P+    P P   +  LD IP+ ++ +  +   WE L     SE    E+ T  K  E 
Sbjct: 909  HYPSWSPPPSPLRRSQPLDDIPEHEQESGLVTSNWEPL---PLSEGSAFEAVTPAKTAES 965

Query: 600  KK 605
            KK
Sbjct: 966  KK 967


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,351,332
Number of Sequences: 59808
Number of extensions: 453080
Number of successful extensions: 1183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)