Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30345.Seq
(949 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 93 1e-18
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 93 1e-18
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 93 1e-18
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 93 1e-18
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 93 1e-18
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 93 1e-18
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 93 1e-18
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 93.1 bits (221), Expect = 1e-18
Identities = 47/94 (50%), Positives = 58/94 (61%)
Frame = +1
Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
+ GTS EQD + ++ K L+V+KPWIT+++TEIL EDD
Sbjct: 6 FRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDD 65
Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
VVIE++ NQLE K P K MQINLTGFLNGKNAR
Sbjct: 66 VVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR 99
Score = 75.8 bits (178), Expect = 2e-13
Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Frame = +3
Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
FS+K+KKL+KQ+KF +CL ++VDMSKV + +
Sbjct: 17 FSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
K P K L K FMGELW LLLSAQ + GIP +F + KKEEIK+R
Sbjct: 77 VKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIKQRQI 136
Query: 615 EQ--------QNKDKDK 641
EQ Q++DKDK
Sbjct: 137 EQEKLASMKKQDEDKDK 153
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,899,013
Number of Sequences: 237096
Number of extensions: 2202751
Number of successful extensions: 8528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8517
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -