Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30345.Seq
         (949 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    79   5e-15
Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical pr...    34   0.17 
Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical pr...    34   0.17 
Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical pr...    34   0.17 
AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical ...    32   0.69 
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    30   2.8  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    30   2.8  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    29   4.9  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    29   4.9  
AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      29   6.4  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    29   6.4  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 36/94 (38%), Positives = 56/94 (59%)
 Frame = +1

Query: 223 YTGTSTEQDXXXXXXXXXXXXK*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNMEDD 402
           + G ++EQD                E     ++   +  +DV+KPWIT ++ +IL MEDD
Sbjct: 6   FRGANSEQDGRFSDKEKKLLKTMKFEPQLEQKIDLNRCNMDVIKPWITARVNDILGMEDD 65

Query: 403 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 504
           VV+EY+ +Q+++K   PK +QIN+TGFLN + AR
Sbjct: 66  VVVEYILSQIDDKNLNPKLLQINVTGFLNARRAR 99



 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRN-SKHGR*CCH*ICHQPA 431
           FSDKEKKL+K MKF   L Q++D+++      +    ++ N             I  Q  
Sbjct: 17  FSDKEKKLLKTMKFEPQLEQKIDLNRCNMDVIKPWITARVNDILGMEDDVVVEYILSQID 76

Query: 432 *RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRM 611
            + +  PK     +      +    F+G+LW LL+ A ASE+GIP S   QK  E+K   
Sbjct: 77  DKNLN-PKLLQINVTGFLNARRAREFVGDLWNLLIEANASEDGIPASLVNQKMAEMKTND 135

Query: 612 XEQQNKDKD 638
            +++  D++
Sbjct: 136 RDEKGDDRE 144


>Z75552-9|CAA99945.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 343 DVLKPWITQKITEILNMEDDVVIEYVTNQLEEK 441
           D ++PW+ +K+T+ L  ED    +++ +Q+E++
Sbjct: 632 DRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQ 664


>Z75551-6|CAA99937.2|  705|Caenorhabditis elegans Hypothetical
           protein W04D2.6a protein.
          Length = 705

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 343 DVLKPWITQKITEILNMEDDVVIEYVTNQLEEK 441
           D ++PW+ +K+T+ L  ED    +++ +Q+E++
Sbjct: 632 DRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQ 664


>Z75551-3|CAA99936.2|  547|Caenorhabditis elegans Hypothetical
           protein W04D2.6b protein.
          Length = 547

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 343 DVLKPWITQKITEILNMEDDVVIEYVTNQLEEK 441
           D ++PW+ +K+T+ L  ED    +++ +Q+E++
Sbjct: 474 DRIRPWVAKKVTQFLGEEDKSFCDFICDQIEKQ 506


>AL110478-3|CAB54348.1|  380|Caenorhabditis elegans Hypothetical
           protein Y26D4A.8 protein.
          Length = 380

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +3

Query: 438 KVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMXE 617
           K+P+ ++    L  + K  E   + G     LLS +A+E+ IP+  +++ KEE K+   E
Sbjct: 302 KIPVVRKTNHALACVRKTTEHLAY-GSSGSELLSLEAAES-IPQEHSEENKEERKEEKKE 359

Query: 618 QQNKDKDK 641
           +  +D+ +
Sbjct: 360 EIREDEQE 367


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
           +++P  K NA   +++P+WK   P  G +     +A ++++G   S  Q   E+ +  M 
Sbjct: 87  KQLPELKFNAQAAEFVPRWK--MPQRGPVTSYAGAAASADHGESSSSFQSSHEQAQLMMC 144

Query: 615 EQQNKDKD 638
               K  D
Sbjct: 145 PYHQKSGD 152


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
           +++P  K NA   +++P+WK   P  G +     +A ++++G   S  Q   E+ +  M 
Sbjct: 87  KQLPELKFNAQAAEFVPRWK--MPQRGPVTSYAGAAASADHGESSSSFQSSHEQAQLMMC 144

Query: 615 EQQNKDKD 638
               K  D
Sbjct: 145 PYHQKSGD 152


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
            protein 8 protein.
          Length = 1206

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 346  VLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNA 501
            V+KP I Q   ++LNM+   +I+   N   E  P  +++++N+  +LN K +
Sbjct: 867  VVKPTIPQN--KVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGS 916


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1152

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 346 VLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNA 501
           V+KP I Q   ++LNM+   +I+   N   E  P  +++++N+  +LN K +
Sbjct: 813 VVKPTIPQN--KVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGS 862


>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 486 KWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMXEQQNKDKDK 641
           +W E+   + ELWE  L ++A  +  P     +  E+  KRM ++ ++ + K
Sbjct: 251 RWTEKHQQLQELWEKCLVSEADRHYSPIFEPTKNSEQTLKRMEDECDRLEKK 302


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 486 KWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMXEQQNKDKDK 641
           +W E+   + ELWE  L ++A  +  P     +  E+  KRM ++ ++ + K
Sbjct: 251 RWTEKHQQLQELWEKCLVSEADRHYSPIFEPTKNSEQTLKRMEDECDRLEKK 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,513
Number of Sequences: 27780
Number of extensions: 346864
Number of successful extensions: 1033
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)