Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30345.Seq
         (949 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    61   1e-09
At2g13690.1 68415.m01510 PRLI-interacting factor, putative simil...    28   7.9  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
 Frame = +1

Query: 223 YTGTSTEQDXXXXXXXXXXXX--K*SLEIASLSRLTCQK*KLDVLKPWITQKITEILNME 396
           + GTS EQD              K + E+ +L  +T  K K+DV+KPWI  ++TE+L +E
Sbjct: 6   FRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDIT--KVKMDVMKPWIATRVTELLGIE 63

Query: 397 DDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLSWE 516
           D+V+I ++   L+ K    K++QI LTGF+     +   E
Sbjct: 64  DEVLINFIYGLLDGKVVNGKEIQITLTGFMEKNTGKFMKE 103



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 39/121 (32%), Positives = 54/121 (44%)
 Frame = +3

Query: 255 FSDKEKKLMKQMKFGDCLTQQVDMSKVKARRAEAVDHSKDNRNSKHGR*CCH*ICHQPA* 434
           FS+K+ KLMK  KF   L   VD++KVK    +    ++                +    
Sbjct: 17  FSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELLGIEDEVLINFIYGLLD 76

Query: 435 RKVPMPKENADQLDWIPKWKERTPFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMX 614
            KV   KE    L    + K    FM ELW LLLSAQ + +G+P+ F   +  E KK+  
Sbjct: 77  GKVVNGKEIQITLTGFME-KNTGKFMKELWTLLLSAQNNPSGVPQQFLDARAAETKKKQE 135

Query: 615 E 617
           E
Sbjct: 136 E 136


>At2g13690.1 68415.m01510 PRLI-interacting factor, putative similar
           to PRLI-interacting factor G [Arabidopsis thaliana]
           GI:11139264 (PMID:9765207); supporting cDNA
           gi|26450291|dbj|AK117606.1|
          Length = 544

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 364 TQKITEILNMEDD--VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLS 510
           T + TE    E+D  VV++   N   E F  PK +++  +G   G +ARLS
Sbjct: 98  TMQETETTQEEEDDAVVVDSTPNLRSESFRAPK-IEVTGSGLSEGYDARLS 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,252,140
Number of Sequences: 28952
Number of extensions: 322848
Number of successful extensions: 943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)