Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30344.Seq
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    51   1e-07
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.37 
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    25   6.0  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERI-DSHA 237
           M+++ A + Y  ++  E    +K++L++++TT IVS   +QS +L++++YL   + +   
Sbjct: 1   MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYLTVLLGNKRE 59

Query: 238 KWDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLYXXSNVVSKADIKTLAECDDXXA 417
           K  ++      FL        L C    +     + LY  +NV+ K+ ++ LAE DD  A
Sbjct: 60  KLRHLKC--VAFLRPTPTTLRLLCEELRDPKYAEYHLY-FTNVIPKSFLERLAESDDFEA 116

Query: 418 VRXVHXVFADY 450
           V+ +   F DY
Sbjct: 117 VKSIQEFFLDY 127



 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
           H+KC+ F+RPT   + LL  ELRDPKY  Y +Y
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLY 95


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 280 RIKTMHFMCSCYPIWHDCLSSRISKLPSVRFP 185
           R++ +H + SC+P  HD  S +  K P   FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 IREDRQSCQMG*HEHMKCIVFIRPTSENIALLSRELRDPKYG 338
           IR D   C     EH    +   P +E  A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 GXERPWNESDING*RNYQHSEYGVQSIGNL 194
           G E+   ESD+N    + H  YG+ + G +
Sbjct: 247 GLEKELTESDVNIDTRFAHPAYGIPNEGTI 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,301
Number of Sequences: 5004
Number of extensions: 39215
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)