Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30344.Seq
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    60   1e-09
09_02_0249 + 6240237-6240287,6241489-6241764                           28   6.1  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M +I  ++ YI +M  +  PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D +A 
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVD-NAS 58

Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
               +  +   +Y     +         +    F  Y    SNV+    I+ LA+ D+  
Sbjct: 59  SSRESMAHLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQE 118

Query: 415 AVRXVHXVFADY 450
            V+ V   +AD+
Sbjct: 119 VVQQVQEFYADF 130



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
           H+K + F+RP+S+N+  L R L  P++  Y ++
Sbjct: 66  HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLF 98


>09_02_0249 + 6240237-6240287,6241489-6241764
          Length = 108

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 328 GSLSSRDNRAMFSDVGRIKTMHFMCSCYPIW 236
           G+ +SR N A   D+ R +T   MC+  P W
Sbjct: 42  GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,961
Number of Sequences: 37544
Number of extensions: 240762
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)