Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30344.Seq
(577 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sortin... 120 4e-27
BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sortin... 120 4e-27
AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sortin... 120 4e-27
AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sortin... 120 4e-27
AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens ... 120 4e-27
AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sortin... 120 4e-27
AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sortin... 120 4e-27
U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting ... 118 1e-26
AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sortin... 113 4e-25
>BC028382-1|AAH28382.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>BC012932-1|AAH12932.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>AL358073-4|CAI14265.1| 570|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>AK223214-1|BAD96934.1| 570|Homo sapiens vacuolar protein sorting
45A variant protein.
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>AK023170-1|BAB14443.1| 570|Homo sapiens protein ( Homo sapiens
cDNA FLJ13108 fis, clone NT2RP3002529, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS45. ).
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>AJ133421-1|CAB40417.1| 570|Homo sapiens vacuolar protein sorting
protein.
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>AF165513-1|AAF86643.1| 570|Homo sapiens vacuolar protein sorting
45 isoform protein.
Length = 570
Score = 120 bits (289), Expect = 4e-27
Identities = 73/152 (48%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
>U35246-1|AAC50931.1| 570|Homo sapiens vacuolar protein sorting
homolog h-vps45 protein.
Length = 570
Score = 118 bits (284), Expect = 1e-26
Identities = 72/152 (47%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +++Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDSLIQ---ELRRPKYSIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXVFADYPGXGXETCSLSXWLDXXQGR 510
V V + DY SL+ L QGR
Sbjct: 118 VVAEVQEFYGDYIAVNPHLFSLNI-LGCCQGR 148
Score = 50.4 bits (115), Expect = 4e-06
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
+H+K I F+RPT EN+ L +ELR PKY +YFIY
Sbjct: 64 KHLKAICFLRPTKENVDSLIQELRRPKYSIYFIY 97
>AL358073-5|CAI14266.1| 316|Homo sapiens vacuolar protein sorting
45 homolog (S. cerevisiae) protein.
Length = 316
Score = 113 bits (272), Expect = 4e-25
Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 2/128 (1%)
Frame = +1
Query: 61 MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
MNV+ AVK YI+KM +SGPGMKV+LMDKETT IVSMVY+QSEILQKEVYLFERIDS +
Sbjct: 1 MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNR 60
Query: 241 WDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDXX 414
+ FL + E+ +T+Y SNV+SK+D+K+LAE D+
Sbjct: 61 EIMKHLKAICFLRPTKENVDYIIQ---ELRRPKYTIYFIYFSNVISKSDVKSLAEADEQE 117
Query: 415 AVRXVHXV 438
V V V
Sbjct: 118 VVAEVQQV 125
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,401,669
Number of Sequences: 237096
Number of extensions: 1488201
Number of successful extensions: 1656
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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