Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30344.Seq
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    73   2e-13
U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical pr...    64   9e-11
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    29   3.1  
Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical pr...    28   4.1  

>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM-NT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLYXXSNVVSKADIKTLAECDDXXA 417
            +N+ N     F+    +          E     + LY  +N ++K D+K LAE D    
Sbjct: 61  SENIKNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLY-FTNTINKYDVKRLAEADKNET 119

Query: 418 VRXVHXVFAD 447
           VR V  VF D
Sbjct: 120 VREVQEVFLD 129



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 28/34 (82%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
           +++KC+VF+RPT +NI  L +EL++P++  Y++Y
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLY 98


>U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical
           protein C44C1.4b protein.
          Length = 132

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM-NT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLYXXSNVVSKADIKTLAECDDXXA 417
            +N+ N     F+    +          E     + LY  +N ++K D+K LAE D    
Sbjct: 61  SENIKNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLY-FTNTINKYDVKRLAEADKNET 119

Query: 418 VRXV 429
           +  V
Sbjct: 120 IPKV 123



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 28/34 (82%)
 Frame = +3

Query: 252 EHMKCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
           +++KC+VF+RPT +NI  L +EL++P++  Y++Y
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLY 98


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 340 TPYLGSLSSRDNRAMFSDVGRIKTMHFMCSCYPIWH 233
           TPYL   +      +FS +  +    F C  YPIWH
Sbjct: 108 TPYLFGFNYFQFAKIFS-ISLLSANRFTCVAYPIWH 142


>Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical
           protein R09H10.2 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 253 SCYPIWHDCLSSRISKL 203
           S Y  WHDCL   ISKL
Sbjct: 43  SNYTAWHDCLMQNISKL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,126,141
Number of Sequences: 27780
Number of extensions: 228066
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)