Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30344.Seq
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77140.1 68414.m08986 vacuolar protein sorting protein 45, pu...    66   2e-11
At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putat...    32   0.32 
At3g11900.1 68416.m01459 amino acid transporter family protein l...    27   6.8  

>At1g77140.1 68414.m08986 vacuolar protein sorting protein 45,
           putative / VPS45p, putative identical to vacuolar
           protein sorting homolog VPS45p [Arabidopsis thaliana]
           gi|2921406|gb|AAC39472
          Length = 569

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXESGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS-HA 237
           M ++ +V+ YI +M  +   GMKV+++D ET S VS+VYSQSE+LQKEV+L E IDS   
Sbjct: 1   MVLVTSVRDYINRMLQDIS-GMKVLILDSETVSNVSIVYSQSELLQKEVFLVEMIDSISV 59

Query: 238 KWDNMNT*NA*FLYVQHQRT*LCCHGN*EILNMVFTLY--XXSNVVSKADIKTLAECDDX 411
             ++M+   A  +Y     +        ++ N  F  Y    SN++    I  LA+ D+ 
Sbjct: 60  SKESMSHLKA--VYFIRPTSDNIQKLRYQLANPRFGEYHLFFSNLLKDTQIHILADSDEQ 117

Query: 412 XAVRXVHXVFADY 450
             V+ V   +AD+
Sbjct: 118 EVVQQVQEYYADF 130



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +3

Query: 255 HMKCIVFIRPTSENIALLSRELRDPKYGVYFIY 353
           H+K + FIRPTS+NI  L  +L +P++G Y ++
Sbjct: 66  HLKAVYFIRPTSDNIQKLRYQLANPRFGEYHLF 98


>At4g12120.1 68417.m01924 cytokinesis-related Sec1 protein, putative
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 662

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 127 KVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSH 234
           KV++MDK T  I+S     SEI Q+ + L E I  H
Sbjct: 44  KVLVMDKFTVKIMSSACKMSEITQEGISLVEVITKH 79


>At3g11900.1 68416.m01459 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 432

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 179 LYTILTMLVVSLSINITFIPGPLSXXILVMYILTACITFIL 57
           ++T  T+LVV L+   + +PG  +   LV   L A I+F+L
Sbjct: 349 IFTTRTLLVVGLAAIASLVPGFGTFASLVGSTLCALISFVL 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,243
Number of Sequences: 28952
Number of extensions: 200758
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)