Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30342.Seq
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    39   0.004
01_06_1437 - 37358912-37359226                                         29   4.2  
03_06_0022 + 31085819-31086305,31086448-31087334                       29   5.6  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
 Frame = -1

Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTL 394
           G + DP+A              +D     L  L+V RD+ LV      R  SL     + 
Sbjct: 192 GSYLDPLADKVLIGCVAIAMVEKDLLHPGLVGLVVVRDLLLVGGAVYKRASSLGWKWNSW 251

Query: 393 SRY--FDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFG 274
           S +   D  H   ++ P FISKVNT  QL+LV   L  P FG
Sbjct: 252 SDFVNLDAIHRE-KVKPLFISKVNTVFQLMLVAAALLQPEFG 292


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 411 PPPRTLSRYFDVTHATAQLAPTFI 340
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


>03_06_0022 + 31085819-31086305,31086448-31087334
          Length = 457

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 499 VLPMGEIKRVATXTLSGHWVPEXT 570
           VLP+G ++  AT  L+GH+ PE T
Sbjct: 236 VLPVGPLEAPATSRLAGHFWPEDT 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,919,650
Number of Sequences: 37544
Number of extensions: 358543
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)