Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30342.Seq
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)                      29   3.2  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   9.9  

>SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 721

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 713 PNFGVXXKXPGNXXXXGPGXXX--ESPGNSRXPKXPGYPENWEGPXHQ 576
           P   V  K PG     G G     + PG+S   K P + E+ +GP HQ
Sbjct: 83  PGHLVEDKRPGQPIDEGSGNQVTDQRPGHSVKNKSPAHLEDDKGPGHQ 130


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 386 YLLNVRGGGKLIYRMTNPATTNAISRPTISSVNEIG 493
           Y LNVR G + I R  NP+   A  RP +   N  G
Sbjct: 468 YPLNVRYGARDISRSKNPSGRMANIRPAVGPDNRAG 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,350,365
Number of Sequences: 59808
Number of extensions: 406715
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)