Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30342.Seq
(789 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ386730-1|ABD46888.1| 301|Homo sapiens cardiolipin synthase pr... 105 2e-22
AL035461-9|CAB55278.1| 301|Homo sapiens cardiolipin synthase 1 ... 105 2e-22
AF241784-1|AAG44472.1| 301|Homo sapiens CAPTase-iso protein. 105 2e-22
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 31 3.6
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 31 3.6
AL662820-3|CAI18113.1| 610|Homo sapiens WD repeat domain 46 pro... 31 3.6
AL662820-2|CAM25468.1| 322|Homo sapiens WD repeat domain 46 pro... 31 3.6
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 31 3.6
>DQ386730-1|ABD46888.1| 301|Homo sapiens cardiolipin synthase
protein.
Length = 301
Score = 105 bits (251), Expect = 2e-22
Identities = 50/102 (49%), Positives = 67/102 (65%)
Frame = -1
Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLS 391
G DP+A + D P+ LT +I+ RD+ L+ A F +RY +LP PRTL+
Sbjct: 165 GSALDPLADKILISILYVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLA 224
Query: 390 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGYVD 265
+YF+ +ATA+L PTFISKVNTAVQL+LV +LA+PVF Y D
Sbjct: 225 KYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPVFNYAD 266
>AL035461-9|CAB55278.1| 301|Homo sapiens cardiolipin synthase 1
protein.
Length = 301
Score = 105 bits (251), Expect = 2e-22
Identities = 50/102 (49%), Positives = 67/102 (65%)
Frame = -1
Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLS 391
G DP+A + D P+ LT +I+ RD+ L+ A F +RY +LP PRTL+
Sbjct: 165 GSALDPLADKILISILYVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLA 224
Query: 390 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGYVD 265
+YF+ +ATA+L PTFISKVNTAVQL+LV +LA+PVF Y D
Sbjct: 225 KYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPVFNYAD 266
>AF241784-1|AAG44472.1| 301|Homo sapiens CAPTase-iso protein.
Length = 301
Score = 105 bits (251), Expect = 2e-22
Identities = 50/102 (49%), Positives = 67/102 (65%)
Frame = -1
Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLS 391
G DP+A + D P+ LT +I+ RD+ L+ A F +RY +LP PRTL+
Sbjct: 165 GSALDPLADKILISILYVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLA 224
Query: 390 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGYVD 265
+YF+ +ATA+L PTFISKVNTAVQL+LV +LA+PVF Y D
Sbjct: 225 KYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPVFNYAD 266
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 31.5 bits (68), Expect = 3.6
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = -2
Query: 746 FXXSPREXXIXPNFGVXXKXPGNXXXXGPGXXXES-----PGNSRXPKXPGYPENWEGPX 582
F P + + P F PG PG PG P+ G P+ ++GP
Sbjct: 1039 FDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
Query: 581 HQR 573
HQ+
Sbjct: 1099 HQQ 1101
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 31.5 bits (68), Expect = 3.6
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = -2
Query: 746 FXXSPREXXIXPNFGVXXKXPGNXXXXGPGXXXES-----PGNSRXPKXPGYPENWEGPX 582
F P + + P F PG PG PG P+ G P+ ++GP
Sbjct: 1039 FDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1098
Query: 581 HQR 573
HQ+
Sbjct: 1099 HQQ 1101
>AL662820-3|CAI18113.1| 610|Homo sapiens WD repeat domain 46
protein.
Length = 610
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 632 SRXPKXPGYPENWEGPXHQRGVXSGTQWP 546
S+ P+ P P W+ P QRG+ SGTQ P
Sbjct: 70 SKKPQVPKKPREWKNPESQRGL-SGTQDP 97
>AL662820-2|CAM25468.1| 322|Homo sapiens WD repeat domain 46
protein.
Length = 322
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 632 SRXPKXPGYPENWEGPXHQRGVXSGTQWP 546
S+ P+ P P W+ P QRG+ SGTQ P
Sbjct: 5 SKKPQVPKKPREWKNPESQRGL-SGTQDP 32
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 31.5 bits (68), Expect = 3.6
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = -2
Query: 746 FXXSPREXXIXPNFGVXXKXPGNXXXXGPGXXXES-----PGNSRXPKXPGYPENWEGPX 582
F P + + P F PG PG PG P+ G P+ ++GP
Sbjct: 1128 FDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQ 1187
Query: 581 HQR 573
HQ+
Sbjct: 1188 HQQ 1190
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,487,545
Number of Sequences: 237096
Number of extensions: 2318693
Number of successful extensions: 4643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4598
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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