Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30342.Seq
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical ...    73   2e-13
AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical ...    73   2e-13
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    28   6.6  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    28   8.8  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    28   8.8  

>AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical
           protein F23H11.9b protein.
          Length = 222

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/100 (36%), Positives = 57/100 (57%)
 Frame = -1

Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLS 391
           G   DP+A             +    P+ LT +++ RDI L+  GF  RY  + PP +LS
Sbjct: 88  GSVLDPVADKLLISTMFITMTYAGLIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLS 147

Query: 390 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGY 271
           R+F+   ++ Q+ PT +SK+NT +Q+ LV  +L+SPVF +
Sbjct: 148 RFFNPQVSSMQVVPTMMSKINTVLQITLVALSLSSPVFDF 187


>AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical
           protein F23H11.9a protein.
          Length = 246

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/100 (36%), Positives = 57/100 (57%)
 Frame = -1

Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLS 391
           G   DP+A             +    P+ LT +++ RDI L+  GF  RY  + PP +LS
Sbjct: 112 GSVLDPVADKLLISTMFITMTYAGLIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLS 171

Query: 390 RYFDVTHATAQLAPTFISKVNTAVQLLLVGTTLASPVFGY 271
           R+F+   ++ Q+ PT +SK+NT +Q+ LV  +L+SPVF +
Sbjct: 172 RFFNPQVSSMQVVPTMMSKINTVLQITLVALSLSSPVFDF 211


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 686 PGNXXXXGPGXXXESPGNSRXPKXPGYPENWEGPXHQRGV 567
           PG+    GP     +PGN   P  PG P+   GP    GV
Sbjct: 223 PGDSGPPGPPGPPGAPGNDGPPGPPG-PKGAPGPDGPPGV 261


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -2

Query: 713 PNFGVXXKXPGNXXXXGPGXXXESPGNSRXPKXPGYPENWEGPXHQRG 570
           P  G     PGN    GP      PG    P  PG P    GP   RG
Sbjct: 183 PGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPGQPGRP----GPPGPRG 226


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 586 GPSQFSGYPGXXGNREFPG--DSXXXPGP-XXKXFPGXFXXTPKLG 714
           G S  SG PG  GN  +PG   +   PGP     FPG      ++G
Sbjct: 174 GESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRMG 219


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 586 GPSQFSGYPGXXGNREFPG--DSXXXPGP-XXKXFPGXFXXTPKLG 714
           G S  SG PG  GN  +PG   +   PGP     FPG      ++G
Sbjct: 174 GESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRMG 219


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
           collagen protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +1

Query: 586 GPSQFSGYPGXXGNREFPG--DSXXXPGP-XXKXFPGXFXXTPKLG 714
           G S  SG PG  GN  +PG   +   PGP     FPG      ++G
Sbjct: 174 GESGRSGVPGLPGNSGYPGLKGAKGDPGPYGLPGFPGVSGLKGRMG 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,288,529
Number of Sequences: 27780
Number of extensions: 334457
Number of successful extensions: 1324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)