Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30342.Seq
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    48   9e-06
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   2.0  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    30   2.0  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    28   8.1  

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
 Frame = -1

Query: 570 GXFWDPMAXXXXXXXXXXXSHWQDXQPISLTLLIVGRDIALVVAGFVIRYISLPPP-RTL 394
           G + DP+A              +D     L  +++ RD+ALV     +R ++L    +T 
Sbjct: 199 GSYLDPLADKVLIGCVAVAMVQKDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTW 258

Query: 393 SRYFDVTHATAQ-LAPTFISKVNTAVQLLLVGTTLASPVFGYVD 265
           S +F++  ++ Q + P FISKVNT  QL LV   +  P FG  D
Sbjct: 259 SDFFNLDGSSPQKVEPLFISKVNTVFQLTLVAGAILQPEFGNPD 302


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 23  LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 166
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 346 SRCKLCGCVCYIEIPTQRSRWW*AYISNDKSSHN 447
           S C +CG   +    T R+ WW A ++  +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 414 LPPPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 307
           L PP++LSR+ D+     Q+ P F   ++  V+ L+
Sbjct: 632 LYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,397
Number of Sequences: 28952
Number of extensions: 290360
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)