Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30338.Seq
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    52   3e-08
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    24   9.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   9.6  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
           DLR KKTRA+R+ALT +E   KT K+I+K+  FP R YA+KA
Sbjct: 81  DLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122



 Score = 48.4 bits (110), Expect = 5e-07
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = +2

Query: 38  VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 217
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 218 KMKVNLRNHYKNR 256
             ++  R  YKN+
Sbjct: 63  SNRLAAREAYKNK 75


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 402 YSSFNGIDSRW---EERFLSDLFPRLDLCF 322
           + +F  + + W   E  FLS +FPR   CF
Sbjct: 248 FGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 363
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,386
Number of Sequences: 5004
Number of extensions: 20596
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)