Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30338.Seq
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    62   2e-10
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    38   0.003
12_01_0152 - 1168928-1169377                                           29   1.8  
11_01_0155 - 1287003-1287452                                           29   1.8  
11_01_0474 - 3666236-3668050                                           27   9.5  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   9.5  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 34/77 (44%), Positives = 44/77 (57%)
 Frame = +2

Query: 29  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 209 YHQKMKVNLRNHYKNRN 259
             QK +  LR  YK ++
Sbjct: 61  ISQKQRAALREAYKKKS 77



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 18/60 (30%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKH------------------EAKIKTRKEIRKKSLFPPRVYAVKA 396
           DLR KKTRA+R+ LTKH                  +  +KT +E +++  FP R YA+KA
Sbjct: 82  DLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +2

Query: 17  VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 196
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 197 VY 202
            Y
Sbjct: 163 AY 164



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHEAKI 333
           DLR KKT A+R+ LTKH+  +
Sbjct: 175 DLRPKKTCAIRRRLTKHQGML 195


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +2

Query: 131 KVTGGVASKLSKIRVVRKAIARVYIVYHQK-----MKVNLRNHYKNRNTSL*I*EPRR 289
           +V GG   K S+I  +R+AIA+  + Y+QK      K  +++ +   + +L + +PRR
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRR 129


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +2

Query: 131 KVTGGVASKLSKIRVVRKAIARVYIVYHQK-----MKVNLRNHYKNRNTSL*I*EPRR 289
           +V GG   K S+I  +R+AIA+  + Y+QK      K  +++ +   + +L + +PRR
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRR 129


>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 231 ILETTTKTEIQAFRFKSQEDPC 296
           +L+TT KT    F +K+Q  PC
Sbjct: 428 MLDTTNKTLPSVFAYKNQSSPC 449


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 223 HLLVIHNVNTCDSFSYNTDLG 161
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,558,660
Number of Sequences: 37544
Number of extensions: 123999
Number of successful extensions: 367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)