Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30338.Seq
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         66   2e-11
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        27   7.4  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  27   9.7  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 36/74 (48%), Positives = 43/74 (58%)
 Frame = +2

Query: 35  KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 214
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 215 QKMKVNLRNHYKNR 256
           Q  + NLR  Y+ +
Sbjct: 71  QTQRDNLRKFYRKK 84



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 393
           DLR K TRAMR++LTK EA  KT K+ +K + F  R YAVK
Sbjct: 90  DLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130


>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 128 AKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNRNTS 265
           A+ T   A   +K+R   + +   YI+Y +K + NL++  +N  TS
Sbjct: 56  AEKTRNYAGLFAKLRAKLRVLRPNYILYRRKARNNLKSLRRNSGTS 101


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 380 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKS 270
           TL G R F       L++ S LV+  RIAR+F   KS
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKS 547


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271 DLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 387
           DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 112 DLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 267  FRFKSQEDPCYAQGSY*TRSKDQDEERD 350
            F   S  DP Y  G Y     D+DEE D
Sbjct: 1207 FNVTSGSDPDYGNGDYDYDENDEDEEGD 1234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,798
Number of Sequences: 59808
Number of extensions: 154742
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)