Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30338.Seq
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    62   2e-10
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    27   8.6  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    27   8.6  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    27   8.6  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 35/73 (47%), Positives = 40/73 (54%)
 Frame = +2

Query: 29  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
           M K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 209 YHQKMKVNLRNHY 247
            +Q  K  LR  Y
Sbjct: 61  INQTQKQELRKFY 73



 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 396
           DLR KKTRA+R+ LT HE  +++ K+  K      R +AVKA
Sbjct: 82  DLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 360
           D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 276 DAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 360
           D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 348 DAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 378 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 286
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 271 DLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 360
           D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 348 DAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 378 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 286
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,511,445
Number of Sequences: 27780
Number of extensions: 115047
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)