Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30338.Seq
(456 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 66 1e-11
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 66 1e-11
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 64 3e-11
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 64 3e-11
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 64 4e-11
At4g14350.2 68417.m02211 protein kinase family protein contains ... 29 2.0
At4g14350.1 68417.m02210 protein kinase family protein contains ... 29 2.0
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 65.7 bits (153), Expect = 1e-11
Identities = 36/76 (47%), Positives = 44/76 (57%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 209 YHQKMKVNLRNHYKNR 256
QK K LR YKN+
Sbjct: 61 SSQKQKSALREAYKNK 76
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 393
DLR KKTRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 82 DLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 65.7 bits (153), Expect = 1e-11
Identities = 36/76 (47%), Positives = 44/76 (57%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 209 YHQKMKVNLRNHYKNR 256
QK K LR YKN+
Sbjct: 61 SSQKQKSALREAYKNK 76
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 393
DLR KKTRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 82 DLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 64.5 bits (150), Expect = 3e-11
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 209 YHQKMKVNLRNHYKNR 256
QK K LR YKN+
Sbjct: 61 ISQKQKSALREAYKNK 76
Score = 56.0 bits (129), Expect = 1e-08
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +1
Query: 178 KKSYRTCLHCVSPEDEGQSXXXXXXXXXXXXDLRAKKTRAMRKALTKHEAKIKTRKEIRK 357
+KS L +S + + DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 358 KSLFPPRVYAVK 393
+ FP R YA+K
Sbjct: 111 EMYFPVRKYAIK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 64.5 bits (150), Expect = 3e-11
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 209 YHQKMKVNLRNHYKNR 256
QK K LR YKN+
Sbjct: 61 ISQKQKSALREAYKNK 76
Score = 55.6 bits (128), Expect = 1e-08
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +1
Query: 178 KKSYRTCLHCVSPEDEGQSXXXXXXXXXXXXDLRAKKTRAMRKALTKHEAKIKTRKEIRK 357
+KS L +S + + DLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 358 KSLFPPRVYAVK 393
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 64.1 bits (149), Expect = 4e-11
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +2
Query: 29 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 208
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 209 YHQKMKVNLRNHYKNR 256
QK K LR YKN+
Sbjct: 61 SSQKQKSALREAYKNK 76
Score = 55.2 bits (127), Expect = 2e-08
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +1
Query: 271 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 393
DLR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 82 DLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 113 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNRNTSL 268
+N++ T G LS I + A A++YI H KM++ K R L
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERRKML 78
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 113 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNRNTSL 268
+N++ T G LS I + A A++YI H KM++ K R L
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERRKML 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,122,280
Number of Sequences: 28952
Number of extensions: 108758
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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