Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30337.Seq
(563 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64; Eukary... 184 1e-45
UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|R... 175 6e-43
UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87; Eukary... 142 4e-33
UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lambl... 124 2e-27
UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1; ... 116 5e-25
UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=... 97 2e-19
UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1; Encepha... 97 2e-19
UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiell... 93 3e-18
UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1; ... 88 1e-16
UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4; Archaea... 88 1e-16
UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10; Thermo... 84 2e-15
UniRef50_A0RXP4 Cluster: 30S ribosomal protein S9P; n=2; Thermop... 71 2e-11
UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089, ... 69 6e-11
UniRef50_UPI0000DA28A7 Cluster: PREDICTED: similar to ribosomal ... 53 5e-06
UniRef50_Q1NYV6 Cluster: 30S ribosomal protein S9; n=1; Candidat... 45 0.001
UniRef50_Q6F0X3 Cluster: 30S ribosomal protein S9; n=19; Bacteri... 43 0.006
UniRef50_Q9PKR2 Cluster: 30S ribosomal protein S9; n=3; Chlamydi... 42 0.008
UniRef50_A5WDK8 Cluster: Ribosomal protein S9; n=2; Proteobacter... 42 0.013
UniRef50_Q8SXF0 Cluster: RH44312p; n=5; Diptera|Rep: RH44312p - ... 38 0.16
UniRef50_A6DDR0 Cluster: 30S ribosomal protein S9; n=1; Caminiba... 38 0.21
UniRef50_P47656 Cluster: 30S ribosomal protein S9; n=5; Firmicut... 37 0.28
UniRef50_A6C0N9 Cluster: 30S ribosomal protein S9; n=1; Planctom... 36 0.49
UniRef50_Q83AX9 Cluster: 30S ribosomal protein S9; n=101; Bacter... 36 0.49
UniRef50_A4FDX8 Cluster: Isoquinoline 1-oxidoreductase, beta sub... 36 0.65
UniRef50_Q9KGD4 Cluster: 30S ribosomal protein S9; n=22; Bacteri... 36 0.65
UniRef50_O14006 Cluster: 40S ribosomal protein S9, mitochondrial... 36 0.86
UniRef50_Q8YPK7 Cluster: 30S ribosomal protein S9; n=26; cellula... 34 2.0
UniRef50_Q3ZJ40 Cluster: Chloroplast 30S ribosomal protein S9; n... 34 2.6
UniRef50_Q5R0K5 Cluster: 30S ribosomal protein S9; n=28; Bacteri... 33 3.5
UniRef50_P82933 Cluster: 28S ribosomal protein S9, mitochondrial... 33 3.5
UniRef50_Q1VE14 Cluster: Ferrichrome-binding protein; n=3; Vibri... 33 6.1
UniRef50_Q8DMK7 Cluster: 30S ribosomal protein S9; n=6; cellular... 33 6.1
UniRef50_Q87S99 Cluster: Putative uncharacterized protein VP0525... 32 8.1
UniRef50_A4LZ01 Cluster: Beta-ketoacyl synthase; n=2; cellular o... 32 8.1
>UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64;
Eukaryota|Rep: 40S ribosomal protein S16 - Homo sapiens
(Human)
Length = 146
Score = 184 bits (449), Expect = 1e-45
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAI
Sbjct: 28 GNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|Rep:
Ribosomal protein S16 - Ixodes scapularis (Black-legged
tick) (Deer tick)
Length = 148
Score = 175 bits (426), Expect = 6e-43
Identities = 82/119 (68%), Positives = 96/119 (80%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G+G+L+VNGRPL+ +EP L+YKL EPILLLGKE+F+ VDIR+ VKGGG+VAQ+YAI
Sbjct: 30 GNGLLKVNGRPLENIEPLTLRYKLLEPILLLGKERFAGVDIRIRVKGGGNVAQIYAIRQA 89
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DE SKKEIKD L+QYDR+LLVADPRRCEPKKFGGPGARARYQKSYR
Sbjct: 90 ISKALVAYYQKYVDEQSKKEIKDTLIQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148
>UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87;
Eukaryota|Rep: 40S ribosomal protein S16 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 143
Score = 142 bits (345), Expect = 4e-33
Identities = 66/119 (55%), Positives = 85/119 (71%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G+++VNG P+ LVEP +L++K+ EP+LL+G +KFS +DIRV V GGGHV+QVYAI
Sbjct: 25 GKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQA 84
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DE SK E+K YDR+LL+AD RR EPKKFGG GAR+R+QKSYR
Sbjct: 85 IAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 143
>UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_480_84573_84097 - Giardia lamblia
ATCC 50803
Length = 158
Score = 124 bits (298), Expect = 2e-27
Identities = 60/119 (50%), Positives = 81/119 (68%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G + VN PL LV P +L+ K+ EPI++LG+ F +D+ + V GGGHV+Q+YA+
Sbjct: 43 GKGDILVNNVPLALVRPEILRTKVSEPIMILGESLFKGLDMNIKVAGGGHVSQIYAVRQA 102
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+S + DEA++ E++ LV YDR L+V+DPRRCE KKFGG GARAR QKSYR
Sbjct: 103 ---ISRGVLASVKDEAARSELRAKLVSYDRQLVVSDPRRCEAKKFGGRGARARRQKSYR 158
>UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 155
Score = 116 bits (278), Expect = 5e-25
Identities = 56/94 (59%), Positives = 66/94 (70%)
Frame = +2
Query: 158 EPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXXFXRVSXXLSXXXXDEASKKEIKDIL 337
EP+L++G +KF+ VDIRV V GGGH +QVYAI + DE SK ++K
Sbjct: 62 EPVLIVGADKFAGVDIRVRVTGGGHTSQVYAIRQAIAKSLVAYYQKYVDEHSKNQLKQAF 121
Query: 338 VQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
VQYDR+LLVAD RR EPKKFGG GARARYQKSYR
Sbjct: 122 VQYDRTLLVADNRRAEPKKFGGRGARARYQKSYR 155
>UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=7;
Trypanosomatidae|Rep: 40S ribosomal protein S16,
putative - Leishmania major
Length = 149
Score = 97.5 bits (232), Expect = 2e-19
Identities = 48/115 (41%), Positives = 67/115 (58%)
Frame = +2
Query: 95 LRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXXFXRV 274
++VNG PL + P L+ K+ E I ++G + +S + I V V GGG V+Q YA +
Sbjct: 35 IKVNGVPLQQILPDTLRAKIMEAITVVGSKYYSRLRIDVAVHGGGQVSQAYAARQAIAKG 94
Query: 275 SXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+E K +KD + YD+ LL+ADPRRCEPKK+G AR R+ KSYR
Sbjct: 95 LIAFFQKYHNEVEKAALKDKFLAYDKFLLIADPRRCEPKKWGRHSARTRFTKSYR 149
>UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S16
- Encephalitozoon cuniculi
Length = 145
Score = 97.5 bits (232), Expect = 2e-19
Identities = 51/119 (42%), Positives = 70/119 (58%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G +R+N P L+ L+ KL+E I ++ + + +T K GG V++VYA+
Sbjct: 27 GEFSIRINKVPFKLITNTLMIAKLKEIICIVEQANIKDLSFDITCKIGGDVSRVYAVRMA 86
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
F + DE K+EI+ L+ +DR LVAD R+ EPKKFGGPGARARYQKSYR
Sbjct: 87 FAKAILAFYGTYFDEWKKQEIQKRLLDFDRFSLVADSRKREPKKFGGPGARARYQKSYR 145
>UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiella
natans|Rep: Ribosomal protein S16 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 139
Score = 93.5 bits (222), Expect = 3e-18
Identities = 45/119 (37%), Positives = 69/119 (57%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G +++NG P++LV P ++ K+ EP +LG + ++ + KGGG V+Q+YAI
Sbjct: 21 GSGKIKINGVPINLVHPLDIKNKILEPFFILGSNERLNLNFDIFSKGGGKVSQIYAIRQS 80
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ + +K + YD+ LL++D R EPKK+GG GARAR+QKSYR
Sbjct: 81 ISKCLVFYYYKYISASKSNLLKIKYLTYDKKLLISDVSRIEPKKYGGLGARARFQKSYR 139
>UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 199
Score = 88.2 bits (209), Expect = 1e-16
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +2
Query: 191 SMVDIRVTVKGGGHVAQVYAISXXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVAD 370
S VDIR+ V GGG +Q+YAI + D AS E++ + V YDR+LL+AD
Sbjct: 117 STVDIRLRVSGGGATSQIYAIRQAIAKSLVAYYAKYYDAASALELRQLFVAYDRTLLIAD 176
Query: 371 PRRCEPKKFGGPGARARYQKSYR 439
RR EPKKFGG GARAR QKSYR
Sbjct: 177 TRRSEPKKFGGHGARARRQKSYR 199
Score = 51.2 bits (117), Expect = 2e-05
Identities = 18/37 (48%), Positives = 33/37 (89%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFS 193
G G++R+NG+P+ LV+P +L++K+ EP+L++G++KFS
Sbjct: 24 GKGLIRLNGQPISLVQPEILRWKVFEPVLVVGEDKFS 60
>UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4;
Archaea|Rep: 30S ribosomal protein S9P - Pyrococcus
horikoshii
Length = 135
Score = 88.2 bits (209), Expect = 1e-16
Identities = 45/121 (37%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G +R+NG+P++++EP + ++ + EP++L G+E ++ VDI V V+GGG + Q A
Sbjct: 22 GRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEA---- 77
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKK--FGGPGARARYQKSY 436
R++ ++ + +K+ ++YDR++LV DPRR EP K G RA+ QKSY
Sbjct: 78 -ARIA--IARALVEWTGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSY 134
Query: 437 R 439
R
Sbjct: 135 R 135
>UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10;
Thermoprotei|Rep: 30S ribosomal protein S9P - Aeropyrum
pernix
Length = 151
Score = 83.8 bits (198), Expect = 2e-15
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G + +NG PL++ + + K+ EP+L+ G+ S+VDIRV V+GGG + Q A+
Sbjct: 25 GRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMA 84
Query: 263 FXR--VSXXLSXXXXDEASK------KEIKDILVQYDRSLLVADPRRCEPKKFGGPGARA 418
R V DE + ++++ +++DR++LV DPRR EP+K+ AR
Sbjct: 85 IARGLVEFFRCEESDDELCRMMDKISRDLRTAFLEHDRTMLVGDPRRTEPEKYMRYSARR 144
Query: 419 RYQKSYR 439
R+QKSYR
Sbjct: 145 RWQKSYR 151
>UniRef50_A0RXP4 Cluster: 30S ribosomal protein S9P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S9P -
Cenarchaeum symbiosum
Length = 149
Score = 70.5 bits (165), Expect = 2e-11
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G +R+N P +++ + + P+ + G + VDI V VKGGG + Q A +
Sbjct: 25 GTGRVRINNVPAEMIVHESAREAILAPLDIAGDAR-KKVDISVRVKGGGFMGQAGASATG 83
Query: 263 FXRVSXXLSXXXXD-------EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARAR 421
R + + + ++++++ + +D+ L+ D RR EPKKFGGPGAR R
Sbjct: 84 ISRALIGWTKSRREPRNHPLTKTAREDLRKRIGDFDKYLISGDARRKEPKKFGGPGARRR 143
Query: 422 YQKSYR 439
QKSYR
Sbjct: 144 KQKSYR 149
>UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089,
moderately similar to 40S RIBOSOMAL PROTEIN S16; n=2;
Homo sapiens|Rep: CDNA FLJ40618 fis, clone THYMU2013089,
moderately similar to 40S RIBOSOMAL PROTEIN S16 - Homo
sapiens (Human)
Length = 178
Score = 69.3 bits (162), Expect = 6e-11
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G +R+N PL+++ LQYKL E LLL KE+ + +DI V VKG GHV Q+YA+
Sbjct: 39 GSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQIYAVLQY 98
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQ 343
+ DEAS +EIKD L +
Sbjct: 99 ISKALVPCYPKYVDEAS-EEIKDTLTR 124
>UniRef50_UPI0000DA28A7 Cluster: PREDICTED: similar to ribosomal
protein S16; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S16 - Rattus norvegicus
Length = 102
Score = 52.8 bits (121), Expect = 5e-06
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +2
Query: 116 LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAI 253
L++ EP QY+L +PIL LGKE+F+ V I V V G G VAQ+YAI
Sbjct: 57 LEMTEPVKQQYQLLDPILPLGKERFARVGIWVRVNGVGRVAQIYAI 102
>UniRef50_Q1NYV6 Cluster: 30S ribosomal protein S9; n=1; Candidatus
Sulcia muelleri str. Hc (Homalodisca coagulata)|Rep: 30S
ribosomal protein S9 - Candidatus Sulcia muelleri str.
Hc (Homalodisca coagulata)
Length = 132
Score = 44.8 bits (101), Expect = 0.001
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Frame = +2
Query: 44 RKPPPQLR*LQSVGHGMLRVNGRPL-DLVEPRLLQYKLQEPILLL-GKEKFSMVDIRVTV 217
R+ R +G G+++VN P + LL K+ +P+LL + KF D + V
Sbjct: 13 RRKTAVARMYMKIGSGLIKVNNIPYKNYFNNNLLFNKISKPLLLTYNQNKF---DFYIKV 69
Query: 218 KGGGHVAQVYAISXXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 397
GGG +Q AIS R K +I + +++LL DPR E KK+
Sbjct: 70 SGGGINSQAEAISLAISRA-----------LCKFDINHKPILKEQNLLTRDPRMVERKKY 118
Query: 398 GGPGARARYQKSYR 439
G +R +Q S R
Sbjct: 119 GKKKSRKNFQFSKR 132
>UniRef50_Q6F0X3 Cluster: 30S ribosomal protein S9; n=19;
Bacteria|Rep: 30S ribosomal protein S9 - Mesoplasma
florum (Acholeplasma florum)
Length = 131
Score = 42.7 bits (96), Expect = 0.006
Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Frame = +2
Query: 83 GHGMLRVNGRP-LDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
G G + VNG P L+ L L++P++ G EK DI VTVKGGG Q A
Sbjct: 25 GKGNIIVNGVPALEFFPYPTLVQDLEQPLVATGTEKD--FDITVTVKGGGFTGQAGATRL 82
Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
R S E +K ++ + LL D R E KK+G GAR Q S R
Sbjct: 83 GIARALLVAS-----EDYRKGLRAV------GLLTRDARIKERKKYGLRGARRAPQYSKR 131
>UniRef50_Q9PKR2 Cluster: 30S ribosomal protein S9; n=3;
Chlamydia|Rep: 30S ribosomal protein S9 - Chlamydia
muridarum
Length = 133
Score = 42.3 bits (95), Expect = 0.008
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYK-LQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
G+G + VNG+ L+ P +Q + P+ +LG + D+ + V GGG QV A
Sbjct: 27 GNGKIDVNGKTLEQYFPLEVQRATILAPLKMLGD--VNSFDLIIRVSGGGVQGQVIAT-- 82
Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
R+ + E K+E+K + L DPR+ E KK+G AR +Q S R
Sbjct: 83 ---RLGLARAVLQEKEDMKQELKS------QGFLTRDPRKKERKKYGRKKARKSFQFSKR 133
>UniRef50_A5WDK8 Cluster: Ribosomal protein S9; n=2;
Proteobacteria|Rep: Ribosomal protein S9 - Psychrobacter
sp. PRwf-1
Length = 128
Score = 41.5 bits (93), Expect = 0.013
Identities = 44/137 (32%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Frame = +2
Query: 32 YSDVRKPPPQLR*LQSVGHGMLRVNGRPLDLVEPR-LLQYKLQEPILLLGKEKFSMVDIR 208
Y R+ R S G G + VNG+PLD R + +++P+ LL + DI
Sbjct: 5 YGTGRRKTSTARVFLSKGTGNIVVNGKPLDEYFGRETSRMVVRQPLELL--DSAETYDIY 62
Query: 209 VTVKGGGHVAQVYAISXXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEP 388
TVKGGG Q AI R + DE K +K + + D R+ E
Sbjct: 63 ATVKGGGINGQAGAIRHGITR-----ALIESDETLKPALK------EAGFVTRDSRQVER 111
Query: 389 KKFGGPGARARYQKSYR 439
KK G AR R Q S R
Sbjct: 112 KKLGLRKARKRPQFSKR 128
>UniRef50_Q8SXF0 Cluster: RH44312p; n=5; Diptera|Rep: RH44312p -
Drosophila melanogaster (Fruit fly)
Length = 395
Score = 37.9 bits (84), Expect = 0.16
Identities = 34/114 (29%), Positives = 47/114 (41%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G + +NG+ + E + +L P+ E VD+ V+GGG Q AI
Sbjct: 289 GTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEGGGPSGQAGAI--- 343
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
R +S + E + LL D RR E KKFG GAR +Y
Sbjct: 344 --RWGIAMSLRSFVDQEMIESMRL-----AGLLTRDYRRRERKKFGQEGARRKY 390
>UniRef50_A6DDR0 Cluster: 30S ribosomal protein S9; n=1;
Caminibacter mediatlanticus TB-2|Rep: 30S ribosomal
protein S9 - Caminibacter mediatlanticus TB-2
Length = 144
Score = 37.5 bits (83), Expect = 0.21
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 GHGMLRVNGRPLD--LVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAI 253
G G + VNG+PLD L L+ +++ P++L+ +E DI V V GGG AQ AI
Sbjct: 25 GSGNITVNGKPLDEFLGGREALKLRVRWPLMLVKQE--GNFDIEVKVLGGGFAAQADAI 81
>UniRef50_P47656 Cluster: 30S ribosomal protein S9; n=5;
Firmicutes|Rep: 30S ribosomal protein S9 - Mycoplasma
genitalium
Length = 132
Score = 37.1 bits (82), Expect = 0.28
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Frame = +2
Query: 74 QSVGHGMLRVNGR-PLDLVEPRLLQYKLQEPILLLG-KEKFSMVDIRVTVKGGGHVAQVY 247
QS G + +N R P D +L+ +++P+ L K+ F DI V VKGGG Q
Sbjct: 23 QSKDKGKITINHRNPSDYFPNKLVIQDMEQPLELTKLKDNF---DINVVVKGGGFTGQAG 79
Query: 248 AISXXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQ 427
AI R + KK +K + L D R E KKFG GAR Q
Sbjct: 80 AIRLGIVRALIKFNPDL-----KKLLKT------KKLTTRDKRAKERKKFGLYGARRAPQ 128
Query: 428 KSYR 439
+ R
Sbjct: 129 FTKR 132
>UniRef50_A6C0N9 Cluster: 30S ribosomal protein S9; n=1;
Planctomyces maris DSM 8797|Rep: 30S ribosomal protein
S9 - Planctomyces maris DSM 8797
Length = 201
Score = 36.3 bits (80), Expect = 0.49
Identities = 38/120 (31%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Frame = +2
Query: 83 GHGMLRVNGRPL-DLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
G G L +NG+ L D + + ++ P L E F VD+ V V GGG Q AI
Sbjct: 95 GSGSLTINGQSLNDYLRVERDRQMVEAP--LKATETFGKVDVWVRVTGGGTTGQTGAIVL 152
Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
R EA + + L L D R E KKFG AR +Q S R
Sbjct: 153 GIARAL---------EAYNNQFHETLSA--GRFLTRDSRMVERKKFGFKKARKSFQFSKR 201
>UniRef50_Q83AX9 Cluster: 30S ribosomal protein S9; n=101;
Bacteria|Rep: 30S ribosomal protein S9 - Coxiella
burnetii
Length = 139
Score = 36.3 bits (80), Expect = 0.49
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPR-LLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
G G + +NG PLD R + +++P++ L + S D+ TV+GGG Q AI
Sbjct: 27 GTGQIIINGLPLDEYFGRETARMVVRQPLVKLDVQ--SRFDVYATVQGGGDSGQAGAIRH 84
Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
R + + + + DPR E KK G GAR Q S R
Sbjct: 85 GITRALIQYDEEGGEGGTWRS-----TLRKAGFVTRDPRMVERKKVGLHGARRGTQFSKR 139
>UniRef50_A4FDX8 Cluster: Isoquinoline 1-oxidoreductase, beta
subunit; n=3; Actinomycetales|Rep: Isoquinoline
1-oxidoreductase, beta subunit - Saccharopolyspora
erythraea (strain NRRL 23338)
Length = 775
Score = 35.9 bits (79), Expect = 0.65
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 176 RAKG*VPEVCTAAVWAQPSPMGARLHAAFHDPRFAITATAVAVFLRPNT 30
R++ + EV A W +P P G AFH +TA V + RP T
Sbjct: 576 RSRAVLDEVARAGGWGRPMPAGTAQGIAFHAEYHGVTAALVEIDCRPET 624
>UniRef50_Q9KGD4 Cluster: 30S ribosomal protein S9; n=22;
Bacteria|Rep: 30S ribosomal protein S9 - Bacillus
halodurans
Length = 130
Score = 35.9 bits (79), Expect = 0.65
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Frame = +2
Query: 83 GHGMLRVNGRPLD-LVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
G G + +NGR LD L+ +++P++ G E D+RV V GGG Q AI
Sbjct: 24 GDGNIVINGRSLDEYFGLETLKLIVKQPLVETGTE--GQYDVRVNVDGGGFTGQAGAIRH 81
Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
R + D + +K L D R E KK+G AR Q S R
Sbjct: 82 GIAR-----ALLQVDPEYRPSLK------SAGFLTRDARMKERKKYGLKAARRAPQFSKR 130
>UniRef50_O14006 Cluster: 40S ribosomal protein S9, mitochondrial
precursor; n=1; Schizosaccharomyces pombe|Rep: 40S
ribosomal protein S9, mitochondrial precursor -
Schizosaccharomyces pombe (Fission yeast)
Length = 132
Score = 35.5 bits (78), Expect = 0.86
Identities = 32/114 (28%), Positives = 48/114 (42%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G VNG P D+ R++ K L + + ++ TV GGG Q A+
Sbjct: 26 GTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAA 84
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
+ S + + K+ IK D ++ D R+ E KK G P AR +Y
Sbjct: 85 ISK-----SLILQEPSLKQVIK------DTHCVLNDKRKVERKKTGQPKARKKY 127
>UniRef50_Q8YPK7 Cluster: 30S ribosomal protein S9; n=26; cellular
organisms|Rep: 30S ribosomal protein S9 - Anabaena sp.
(strain PCC 7120)
Length = 138
Score = 34.3 bits (75), Expect = 2.0
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYK--LQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIS 256
G G L VNG+P DL Y ++ P+ LG E + DI V +GGG Q ++
Sbjct: 31 GTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLE--NEYDILVKAEGGGLTGQADSVR 88
Query: 257 XXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 436
R L D ++ +K L DPR E KK+G AR Q S
Sbjct: 89 LGVARALCQL-----DPENRPPLKT------EGYLTRDPRAKERKKYGLHKARKAPQYSK 137
Query: 437 R 439
R
Sbjct: 138 R 138
>UniRef50_Q3ZJ40 Cluster: Chloroplast 30S ribosomal protein S9; n=2;
Eukaryota|Rep: Chloroplast 30S ribosomal protein S9 -
Pseudendoclonium akinetum (Green alga)
Length = 141
Score = 33.9 bits (74), Expect = 2.6
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = +2
Query: 83 GHGMLRVNG-RPLDLVEPRL-LQYKLQEPILLLG-KEKFSMVDIRVTVKGGGHVAQVYAI 253
G+G +NG ++ ++ + L + +QEP+ L K +F+++ + VKGGG V QV AI
Sbjct: 34 GNGEFTINGISGIEYMQQKEELIFAIQEPLHFLKLKNEFNLI---IKVKGGGLVGQVNAI 90
Query: 254 SXXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKS 433
R + D + +K + L DPR E KK+G AR Q S
Sbjct: 91 KLGIAR-----ALCEFDLTYRNSLKL------KGFLTRDPRCKERKKYGLKKARKAPQFS 139
Query: 434 YR 439
R
Sbjct: 140 KR 141
>UniRef50_Q5R0K5 Cluster: 30S ribosomal protein S9; n=28;
Bacteria|Rep: 30S ribosomal protein S9 - Idiomarina
loihiensis
Length = 130
Score = 33.5 bits (73), Expect = 3.5
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPR-LLQYKLQEPILLLGK-EKFSMVDIRVTVKGGGHVAQVYAIS 256
G G +++N R L+ R Q +++P+ L+ EKF D+ +TV GGG Q AI
Sbjct: 24 GSGNIKINNRELNEYFGRETAQMVVRQPLELVEMTEKF---DMYITVSGGGTTGQAGAIR 80
Query: 257 XXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 436
R + DEA + ++ + D R+ E KK G AR R Q S
Sbjct: 81 HGITR-----ALMQYDEALRGPLR------KEGYVTRDARQVERKKIGLHKARKRPQFSK 129
Query: 437 R 439
R
Sbjct: 130 R 130
>UniRef50_P82933 Cluster: 28S ribosomal protein S9, mitochondrial
precursor; n=29; Euteleostomi|Rep: 28S ribosomal protein
S9, mitochondrial precursor - Homo sapiens (Human)
Length = 396
Score = 33.5 bits (73), Expect = 3.5
Identities = 34/114 (29%), Positives = 44/114 (38%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G ++VNG L P + Q + Q ++ D+ TV GGG AQ AI
Sbjct: 289 GSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLA 347
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
+ S DE LL DPR E KK G GAR ++
Sbjct: 348 MAKA--LCSFVTEDEVEWMR--------QAGLLTTDPRVRERKKPGQEGARRKF 391
>UniRef50_Q1VE14 Cluster: Ferrichrome-binding protein; n=3;
Vibrio|Rep: Ferrichrome-binding protein - Vibrio
alginolyticus 12G01
Length = 294
Score = 32.7 bits (71), Expect = 6.1
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -2
Query: 178 AEQ--KDRFLKFVLQQSGLNQVQWAPVYTQHSMTHALQLPQL 59
AEQ +D F ++V+QQSG +Q APV++ SM AL+ +L
Sbjct: 242 AEQLSQDPFWQYVVQQSGEKVMQVAPVWSFGSMPSALRFAEL 283
>UniRef50_Q8DMK7 Cluster: 30S ribosomal protein S9; n=6; cellular
organisms|Rep: 30S ribosomal protein S9 - Synechococcus
elongatus (Thermosynechococcus elongatus)
Length = 137
Score = 32.7 bits (71), Expect = 6.1
Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Frame = +2
Query: 83 GHGMLRVNGRP-LDLVEPRLLQYKL-QEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIS 256
G G L +NGR D ++ + L + P+ LG E + DI V GGG Q AI
Sbjct: 30 GSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLE--NSYDIYVNATGGGLTGQADAIR 87
Query: 257 XXFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 436
R L D ++K +K L DPR E +K+G AR Q S
Sbjct: 88 LGIARALCQL-----DIENRKPLKT------EGYLTRDPRAKERRKYGLRKARKAPQYSK 136
Query: 437 R 439
R
Sbjct: 137 R 137
>UniRef50_Q87S99 Cluster: Putative uncharacterized protein VP0525;
n=6; Vibrio|Rep: Putative uncharacterized protein VP0525
- Vibrio parahaemolyticus
Length = 385
Score = 32.3 bits (70), Expect = 8.1
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = -2
Query: 259 LADSVNLCYMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTH 80
LA NL + T +D S VN + A++++RF+ Q Q Q AP+ T S
Sbjct: 18 LAIDENLTQLVTDIDILSSVNPLNY--AQERERFISNKYSQEPNFQYQKAPLDTHQSKRR 75
Query: 79 ALQLP 65
+LP
Sbjct: 76 LYELP 80
>UniRef50_A4LZ01 Cluster: Beta-ketoacyl synthase; n=2; cellular
organisms|Rep: Beta-ketoacyl synthase - Geobacter
bemidjiensis Bem
Length = 2396
Score = 32.3 bits (70), Expect = 8.1
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 2 QDVSPSRPSKYSDVRKPPPQLR*LQSVGHGMLRVNGRPLDLVEPRLLQYKLQEPIL 169
Q V+P+ PS ++ + PQ Q G +VN PL V P +Q +QEP+L
Sbjct: 1469 QVVAPTAPSTHNAATQAQPQAAQPQM---GQPQVNPAPLQAVSPLPIQGAIQEPLL 1521
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,580,142
Number of Sequences: 1657284
Number of extensions: 9931292
Number of successful extensions: 24857
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 23980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24831
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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