Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    28   0.064
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    23   2.4  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.6  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 0.064
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 163 RFLKFVLQQSGLNQVQWAPVYTQHSMTHALQLPQLRWRFSYVRILGRPGWA 11
           R++K VL +SG++      +YT HS  HA      R   S   I    GW+
Sbjct: 268 RWIKMVLAESGVD----TSIYTAHSTRHAATSAAARKGISLDLIRKTAGWS 314


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 250 SVNLCYMTTTLDCHSDVNHREF 185
           +V +C+    + CH D+  R F
Sbjct: 2   AVAICFALMCIACHPDIQERIF 23


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   DVSPSRPSKYSDVRKPPPQLR*LQSVGHGMLRVNGR 112
           DV      K +D++K  P+L+ L SVG G   V+G+
Sbjct: 80  DVIKDNYRKVTDLKKRFPKLKVLLSVG-GNADVSGQ 114


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPP 58
           SP  P +  DV+ PPP
Sbjct: 723 SPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 11  SPSRPSKYSDVRKPPP 58
           SP  P +  DV+ PPP
Sbjct: 615 SPLTPHEAFDVKLPPP 630


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 84  PTLCNYRNCGGGFLTSEYL 28
           P +CN+  CG  F  S+ L
Sbjct: 344 PFVCNWLFCGKRFTRSDEL 362


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,579
Number of Sequences: 336
Number of extensions: 2547
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)