Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   146   1e-36
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   146   1e-36
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    36   0.005
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    27   2.5  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  146 bits (355), Expect = 1e-36
 Identities = 70/120 (58%), Positives = 86/120 (71%)
 Frame = +2

Query: 80  VGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
           VG G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V GGGHV+Q+YAI  
Sbjct: 21  VGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQ 80

Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
              +          DE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  146 bits (355), Expect = 1e-36
 Identities = 70/120 (58%), Positives = 86/120 (71%)
 Frame = +2

Query: 80  VGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISX 259
           VG G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV V GGGHV+Q+YAI  
Sbjct: 21  VGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQ 80

Query: 260 XFXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
              +          DE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 32/114 (28%), Positives = 48/114 (42%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G   VNG P D+   R++  K      L    + +  ++  TV GGG   Q  A+   
Sbjct: 26  GTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAA 84

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
             +     S    + + K+ IK      D   ++ D R+ E KK G P AR +Y
Sbjct: 85  ISK-----SLILQEPSLKQVIK------DTHCVLNDKRKVERKKTGQPKARKKY 127


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 142 QQSGLNQVQWAPVYTQHSMTHALQLPQLRWRFSYVR 35
           +Q+G+ Q  WAP+YT  S  ++++  ++   FSY++
Sbjct: 212 RQNGIYQT-WAPLYTMFSRGNSIEKARV-LNFSYIK 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,901
Number of Sequences: 5004
Number of extensions: 37990
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)