Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          149   2e-36
11_01_0155 - 1287003-1287452                                          149   2e-36
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288...    31   0.84 
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   5.9  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  149 bits (361), Expect = 2e-36
 Identities = 66/119 (55%), Positives = 87/119 (73%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G+++VNG P++L+ P +L+ K  EPILL G+ +F  +D+R+ V+GGG  +Q+YAI   
Sbjct: 31  GRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQA 90

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 91  IAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  149 bits (361), Expect = 2e-36
 Identities = 66/119 (55%), Positives = 87/119 (73%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G+++VNG P++L+ P +L+ K  EPILL G+ +F  +D+R+ V+GGG  +Q+YAI   
Sbjct: 31  GRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQA 90

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DEASKKE+KDI  +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 91  IAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149


>12_02_0981 -
           25027336-25027596,25028017-25028361,25028681-25028827,
           25028906-25029970
          Length = 605

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +2

Query: 47  KPPPQLR*LQSVGHGMLRVNGRPLDLVEPRLLQYKLQ 157
           +PPPQ+R   SV H  LRVN   +D+  PRL++  L+
Sbjct: 360 EPPPQIR---SVRHLCLRVNYTEMDVRLPRLMEQILK 393


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 104 NGRPLDLVEPRLLQYKLQEPILLL 175
           NG PLD V+P+L ++  +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,720
Number of Sequences: 37544
Number of extensions: 293945
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)