Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   7e-33
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   8.0  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  137 bits (331), Expect = 7e-33
 Identities = 66/97 (68%), Positives = 75/97 (77%)
 Frame = +2

Query: 149 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXXFXRVSXXLSXXXXDEASKKEIK 328
           K++EPILLLGKE+F  VDIRV VKGGGH +++YAI     +          DE SKKEI+
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70

Query: 329 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
           DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71  DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 79  RGSWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 198
           RGSW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 17  RGSWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 193 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 107
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
 Frame = +3

Query: 63  CGNCKAWVMECCV*TG---------AHWTWLSPDCCSTNFRNLSFCSARKNSL 194
           C +C  W    C   G         +  TW+ P C S+NF + S  ++  NS+
Sbjct: 688 CDSCDLWFHSSCCQIGNSTYNSLANSSCTWICPCCGSSNFSSGSIFTSSSNSI 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,550
Number of Sequences: 59808
Number of extensions: 324954
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)