Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30337.Seq
(563 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 184 1e-46
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 184 1e-46
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 184 1e-46
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 184 1e-46
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 95 1e-19
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 69 9e-12
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 33 0.52
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 33 0.52
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.5
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.5
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.5
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 184 bits (449), Expect = 1e-46
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAI
Sbjct: 28 GNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 184 bits (449), Expect = 1e-46
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAI
Sbjct: 28 GNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 184 bits (449), Expect = 1e-46
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAI
Sbjct: 28 GNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 184 bits (449), Expect = 1e-46
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV VKGGGHVAQ+YAI
Sbjct: 28 GNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
+ DEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 95.5 bits (227), Expect = 1e-19
Identities = 41/58 (70%), Positives = 52/58 (89%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIS 256
G+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+ VDIRV VKGGGHVAQ+Y S
Sbjct: 28 GNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGES 85
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 69.3 bits (162), Expect = 9e-12
Identities = 38/87 (43%), Positives = 51/87 (58%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G +R+N PL+++ LQYKL E LLL KE+ + +DI V VKG GHV Q+YA+
Sbjct: 39 GSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQIYAVLQY 98
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQ 343
+ DEAS +EIKD L +
Sbjct: 99 ISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 33.5 bits (73), Expect = 0.52
Identities = 34/114 (29%), Positives = 44/114 (38%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G ++VNG L P + Q + Q ++ D+ TV GGG AQ AI
Sbjct: 289 GSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLA 347
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
+ S DE LL DPR E KK G GAR ++
Sbjct: 348 MAKA--LCSFVTEDEVEWMR--------QAGLLTTDPRVRERKKPGQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.52
Identities = 34/114 (29%), Positives = 44/114 (38%)
Frame = +2
Query: 83 GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
G G ++VNG L P + Q + Q ++ D+ TV GGG AQ AI
Sbjct: 195 GSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLA 253
Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
+ S DE LL DPR E KK G GAR ++
Sbjct: 254 MAKA--LCSFVTEDEVEWMR--------QAGLLTTDPRVRERKKPGQEGARRKF 297
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 308 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 391
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 308 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 391
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 308 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 391
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,183,550
Number of Sequences: 237096
Number of extensions: 1619167
Number of successful extensions: 3310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3310
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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