Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p pro...   187   8e-48
AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA...   187   8e-48
AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p pro...    38   0.009
AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA ...    38   0.009

>AY070671-1|AAL48142.1|  148|Drosophila melanogaster RH07540p
           protein.
          Length = 148

 Score =  187 bits (456), Expect = 8e-48
 Identities = 87/119 (73%), Positives = 99/119 (83%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G+G+L+VNGRPL+ +EP++LQYKLQEP+LLLGKEKF+ VDIRV V GGGHVAQ+YAI   
Sbjct: 30  GNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQA 89

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DEASKKEIKDILVQYDR+LLV DPRRCEPKKFGGPGARARYQKSYR
Sbjct: 90  ISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +1

Query: 4  RREPIQAVQVFGR 42
          RREP+QAVQVFGR
Sbjct: 5  RREPVQAVQVFGR 17


>AE013599-3413|AAF46862.1|  148|Drosophila melanogaster CG4046-PA
           protein.
          Length = 148

 Score =  187 bits (456), Expect = 8e-48
 Identities = 87/119 (73%), Positives = 99/119 (83%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G+G+L+VNGRPL+ +EP++LQYKLQEP+LLLGKEKF+ VDIRV V GGGHVAQ+YAI   
Sbjct: 30  GNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQA 89

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DEASKKEIKDILVQYDR+LLV DPRRCEPKKFGGPGARARYQKSYR
Sbjct: 90  ISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +1

Query: 4  RREPIQAVQVFGR 42
          RREP+QAVQVFGR
Sbjct: 5  RREPVQAVQVFGR 17


>AY089671-1|AAL90409.1|  395|Drosophila melanogaster RH44312p
           protein.
          Length = 395

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 34/114 (29%), Positives = 47/114 (41%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G + +NG+ +   E    + +L  P+     E    VD+   V+GGG   Q  AI   
Sbjct: 289 GTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEGGGPSGQAGAI--- 343

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
             R    +S     +    E   +       LL  D RR E KKFG  GAR +Y
Sbjct: 344 --RWGIAMSLRSFVDQEMIESMRL-----AGLLTRDYRRRERKKFGQEGARRKY 390


>AE014297-663|AAF54157.3|  395|Drosophila melanogaster CG2957-PA
           protein.
          Length = 395

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 34/114 (29%), Positives = 47/114 (41%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G + +NG+ +   E    + +L  P+     E    VD+   V+GGG   Q  AI   
Sbjct: 289 GTGKISINGKDISYFEDENCREQLLFPLQF--SELLGKVDVEANVEGGGPSGQAGAI--- 343

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 424
             R    +S     +    E   +       LL  D RR E KKFG  GAR +Y
Sbjct: 344 --RWGIAMSLRSFVDQEMIESMRL-----AGLLTRDYRRRERKKFGQEGARRKY 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,201,874
Number of Sequences: 53049
Number of extensions: 460351
Number of successful extensions: 1086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)