Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   159   1e-39
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   5.3  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   5.3  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  159 bits (386), Expect = 1e-39
 Identities = 72/119 (60%), Positives = 91/119 (76%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  VDIR+ V GGGHVAQ+YA+   
Sbjct: 26  GQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQA 85

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DE SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 86  LAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 DEASKKEIKDILVQYDRSLLVADPRRCE 385
           DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 153 DEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 229 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 131
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 229 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 131
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 356 LLVADPRRCEPKKFGGPGARARY 424
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,115
Number of Sequences: 27780
Number of extensions: 225621
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)