Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30337.Seq
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   157   6e-39
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           156   8e-39
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   153   1e-37
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    32   0.30 

>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  157 bits (380), Expect = 6e-39
 Identities = 71/119 (59%), Positives = 92/119 (77%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G++++NG P++L +P +L++K+ EPILLLGK +F+ V++R+ V GGGH +QVYAI   
Sbjct: 28  GSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQS 87

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 88  IAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  156 bits (379), Expect = 8e-39
 Identities = 70/119 (58%), Positives = 92/119 (77%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G++++NG P++L +P +L++K+ EP+LLLGK +F+ V++R+ V GGGH +QVYAI   
Sbjct: 28  GSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQS 87

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 88  IAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  153 bits (370), Expect = 1e-37
 Identities = 68/119 (57%), Positives = 91/119 (76%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD+R+   GGG+ ++VYAI   
Sbjct: 28  GSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQS 87

Query: 263 FXRVSXXLSXXXXDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 439
             +          DE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 88  IAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +2

Query: 83  GHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAISXX 262
           G G  +VN +  D+  P +L ++      L   +     DI+ TVKGGG   QV AI   
Sbjct: 324 GEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLG 382

Query: 263 FXR 271
             R
Sbjct: 383 ISR 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,402
Number of Sequences: 28952
Number of extensions: 215458
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)