Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30335.Seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   2e-31
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   6.1  
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)                    28   6.1  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   6.1  
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_6214| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  132 bits (320), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 70/80 (87%)
 Frame = +1

Query: 13  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 192
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 193 HSRARVRKNTEARRKGRHCG 252
           HSRARVRK  EAR KGRH G
Sbjct: 86  HSRARVRKADEARSKGRHSG 105



 Score =  130 bits (315), Expect = 8e-31
 Identities = 63/94 (67%), Positives = 70/94 (74%)
 Frame = +3

Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
           KG     GKR+GTANARMPQK +W                AKKID H+YHSLYMK+KGNV
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNV 159

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           FKNKRVLMEYIH+KKAEKAR+K+LSDQAEARR K
Sbjct: 160 FKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNK 193


>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 322 TLCLCTHSSFCGIRALAVPLLLPSHSDDPFYVPLCFCGHG 203
           TLC+  H S C    L + L +  HS     + LC  GHG
Sbjct: 408 TLCIGGHGSAC----LTITLCIGGHSSACLTITLCIGGHG 443



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 322 TLCLCTHSSFCGIRALAVPLLLPSHSDDPFYVPLCFCGHG 203
           TLC+  HSS C    L + L +  H      + LC  GHG
Sbjct: 422 TLCIGGHSSAC----LTITLCIGGHGSARHTITLCIGGHG 457



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 322 TLCLCTHSSFCGIRALAVPLLLPSHSDDPFYVPLCFCGHG 203
           TLC+  HSS C    L + L +  H      + LC  GHG
Sbjct: 674 TLCIGGHSSAC----LTITLCIGGHGSARHTITLCIGGHG 709


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 568 FLLLGGNTFLAALAC 524
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           F+  +  MEY  +   EKA  K+   Q++A RIK
Sbjct: 80  FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIK 113


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 552 PPRRRNCCRPSLEKTKPRLPLRSK 623
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 375 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 274
           D  + S Q C     FLEP  VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225


>SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 569 VPPSWRQYVPRGACVPPLLYSAGLSLVAKHLRPGLLSLLP-VDVLHEHTLVLEHI 408
           +PPSW+      A V PL     +++V KH+RP  +SL P +  L E  ++  H+
Sbjct: 95  LPPSWKD-----ADVTPLPKVKPVTIVTKHIRP--ISLTPALSKLAEDFVLRNHV 142


>SB_6214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 205 RVRKNTEARRKGRHCGLVREEVL 273
           R +K++  RRK  HCG V EE++
Sbjct: 81  RKKKDSTTRRKVYHCGFVPEELI 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,972,069
Number of Sequences: 59808
Number of extensions: 454050
Number of successful extensions: 1354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)