Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30335.Seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 118 3e-27
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 117 8e-27
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 116 1e-26
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.8
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 28 6.6
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 28 6.6
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.6
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 6.6
At5g67310.1 68418.m08488 cytochrome P450 family protein 27 8.7
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.7
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 118 bits (285), Expect = 3e-27
Identities = 57/97 (58%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
+R R EA+RKGRH G RE LP ++ R
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMR 97
Score = 111 bits (267), Expect = 4e-25
Identities = 54/94 (57%), Positives = 62/94 (65%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GT AR+P K LW +KKIDRH+YH +YMK KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNV 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLME IH+ KAEKAR K L+DQ EA+RIK
Sbjct: 132 FKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 117 bits (281), Expect = 8e-27
Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
+R RK A+ KGRH G RE LP +V R
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMR 97
Score = 108 bits (260), Expect = 3e-24
Identities = 52/94 (55%), Positives = 60/94 (63%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GT AR+P K LW KKID+H+YH +YM+ KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNV 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 116 bits (279), Expect = 1e-26
Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCGL-----VREEVLPMRVCHRR 297
+R R+ A+RKGRH G RE LP +V R
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMR 97
Score = 111 bits (266), Expect = 5e-25
Identities = 54/94 (57%), Positives = 60/94 (63%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GT AR+P K LW KKIDRH+YH +YMK KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNV 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 357 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 467
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 493 WSLSIFVLAFSAFFLWMYSMSTRL 422
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 381 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRIK*R---RHASAARN 545
H + G V + + +++ + AEK ++ +++ ++RR + R R S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 546 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 629
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 381 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRIK*R---RHASAARN 545
H + G V + + +++ + AEK ++ +++ ++RR + R R S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 546 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 629
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 182 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 87
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 98 GSNHTFFLPHRITEAASLFCSLRELI 21
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At5g67310.1 68418.m08488 cytochrome P450 family protein
Length = 507
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 411 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 310
H S C V+G D + +W F + AI +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 354 AKKIDRHLYHSLYMKAKGNVFKNKRVL 434
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,031
Number of Sequences: 28952
Number of extensions: 315664
Number of successful extensions: 883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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