Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30332.Seq
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   5.6  
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.8  

>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 729 GTCALPFLSTDFTPVLSEPESSVEXTFASIVKRNRP 622
           G C   FLS+ F+P  +E +S+   T +S+    +P
Sbjct: 226 GDCIAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 735 LWGTCALPFLSTDFTPVLSEPESSV 661
           ++ +C LP     FT  LS P+SSV
Sbjct: 17  IYPSCLLPISEQSFTYTLSIPDSSV 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,257
Number of Sequences: 5004
Number of extensions: 48446
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)