Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30332.Seq
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    30   2.5  
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    30   2.5  
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    29   3.4  
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595     29   4.4  
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818           29   4.4  
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    28   7.8  

>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 186 RSS*CVKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKET-QNVKSQDIKS 362
           RSS   KS   GEG + E   +  + + K +P P K  T+  +   K + + V+ +  +S
Sbjct: 73  RSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRS 132

Query: 363 GEQQKGKGPA 392
               K K  A
Sbjct: 133 PSPTKAKALA 142


>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
           Q+   G FL  G  E+ RS      +    + SA  R GE A+ +D+ +R   +GK    
Sbjct: 20  QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79

Query: 285 PAKGVTVPT 311
              G T PT
Sbjct: 80  SNPGET-PT 87


>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNE 393


>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
          Length = 216

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186


>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
          Length = 216

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/46 (21%), Positives = 27/46 (58%)
 Frame = +3

Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGE 368
           + E++ S  E++GK + K  +G+       + + +N+K++++  G+
Sbjct: 51  ESEEEESEDESEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGK 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,789
Number of Sequences: 37544
Number of extensions: 385559
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)