Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30332.Seq
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.12 
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   31   1.1  
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_3663| Best HMM Match : MBT (HMM E-Value=0)                          30   2.6  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  29   6.0  
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)                29   6.0  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 28   7.9  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      28   7.9  

>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 216 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQ 350
           A    +KE ++ RK+++GKP+P+  K    PTRK +K  + +  +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336


>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 YGVGVVNRYALFLDDETDPLDALKAREQ 219
           Y +GV NR+ L L DE DP    K  E+
Sbjct: 6   YSIGVNNRFGLLLSDEEDPETTFKESEK 33


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTR-KGIKETQNVKSQDIKSGEQQK 377
           KSA  GEG +   ++ +K N G    K  K +T   + K  +E +  K Q I+  +++K
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQEDKEKK 550


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 320
           G+ +QK+++  RK N+GKP P  +K + +    G
Sbjct: 46  GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79


>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
          Length = 327

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 207 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 311
           SA + +  ++E++   KE + KP+P+P     +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
           K AR     + ++Q++ +E K +   K A+      R+G K  +  K+++ +  ++QK
Sbjct: 99  KRARTETTRRGQEQKTPEEGKNRNHQKKARTENTRRRQGEKPPEEGKNRNTRKRQEQK 156


>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
          Length = 341

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 222 EGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
           E  QKE+ +  +  K + +PK AK  T  + K I+E +    QD +  E  K
Sbjct: 117 EEVQKEEDKDGEVEKSEEKPKEAKAETEESGK-IEEVETTTEQDKQPEEVVK 167


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 207 SARAGEGAQ--KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGE 368
           +A  GE A    +D  + K +K K +P+  K VT+  + G+K    VK +   S +
Sbjct: 135 NADYGEAASLTADDSTAHKSDK-KHDPEAKKQVTITVQPGVKPKPTVKKRSTPSAD 189


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 252  RKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIK-SGEQQKGKG 386
            ++E + KP P P       + KG  E++  K +  K  GE +K KG
Sbjct: 1490 KEEPEEKPSPSPKTANKSESEKGKGESEKDKGESEKDKGESEKDKG 1535


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 213 RAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQKGK 383
           + G+GA ++++ + K+ KG  E +  K  T       K+      Q   +GEQ+KG+
Sbjct: 25  KEGKGATEQEKGAIKQGKGATEQE--KEATEQGNGASKQGTGASEQGKGAGEQEKGE 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,763,153
Number of Sequences: 59808
Number of extensions: 416201
Number of successful extensions: 1143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)