Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30332.Seq
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    29   3.0  
Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical p...    29   5.3  
EU068465-1|ABU49430.1|  715|Caenorhabditis elegans PRO-2 protein.      29   5.3  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    29   5.3  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   5.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   5.3  
Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 671 SGSDKTGVKSVDKKGRAQVPHNWG 742
           SGSD+TGV+S DKK       NWG
Sbjct: 184 SGSDRTGVRSFDKKD-GHGKGNWG 206


>Z99268-1|CAB16466.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
           +K   A E ++K+D++ +KE +     K     TV     +K E    K + IK G   K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695


>Z81573-4|CAB04627.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
           +K   A E ++K+D++ +KE +     K     TV     +K E    K + IK G   K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695


>Z49908-10|CAA90103.1|  715|Caenorhabditis elegans Hypothetical
           protein C07E3.2 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
           +K   A E ++K+D++ +KE +     K     TV     +K E    K + IK G   K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695


>EU068465-1|ABU49430.1|  715|Caenorhabditis elegans PRO-2 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 201 VKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIK-ETQNVKSQDIKSGEQQK 377
           +K   A E ++K+D++ +KE +     K     TV     +K E    K + IK G   K
Sbjct: 636 MKERSAVENSKKDDKKKKKEEEAAAAKKRKPNETVEDEDDVKPEVSKAKRKRIKIGAAAK 695


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
            ++KE +GKPE K  K  T      I ET    ++D+   +Q +
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9213


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
            ++KE +GKPE K  K  T      I ET    ++D+   +Q +
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDIKSGEQQK 377
            ++KE +GKPE K  K  T      I ET    ++D+   +Q +
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
           K + AG+G  K+  +  KE KG  + +  K  + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,704
Number of Sequences: 27780
Number of extensions: 301236
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)