Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30330.Seq
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    24   3.4  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    23   5.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    23   7.8  

>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 122 REKPKRSTKSNERRR-SPRXVLSFSKI 199
           + KPK+S KSN  +  S R  LSF  I
Sbjct: 352 KSKPKKSNKSNNNQADSDRLNLSFGTI 378


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 151 TFSAPFRLFPIRAMRLFSCARCRAIALR 68
           ++    RL  +RA +L S +RC A+ L+
Sbjct: 456 SYPMTIRLLGVRATKLVSKSRCLAMQLK 483


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPR 175
           D EKP R  K + ++ SP+
Sbjct: 105 DSEKPVRKNKKSSKKASPK 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,199
Number of Sequences: 5004
Number of extensions: 4757
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)