Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30330.Seq
(274 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_49526| Best HMM Match : HSBP1 (HMM E-Value=0.28) 25 7.2
SB_26652| Best HMM Match : HSBP1 (HMM E-Value=0.28) 25 7.2
SB_22142| Best HMM Match : Exo_endo_phos (HMM E-Value=0.25) 25 7.2
SB_13719| Best HMM Match : HSBP1 (HMM E-Value=0.28) 25 7.2
SB_13485| Best HMM Match : HSBP1 (HMM E-Value=1.4) 25 7.2
SB_2790| Best HMM Match : HSBP1 (HMM E-Value=0.15) 25 7.2
SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28) 25 7.2
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06) 25 7.2
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_16918| Best HMM Match : Catalase-rel (HMM E-Value=7.1) 25 9.5
>SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 286 HRVERKKAKSRSLTQSEKERPRTIVCKLKDWK 317
>SB_49526| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 469
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 188
>SB_26652| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 335
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 188
>SB_22142| Best HMM Match : Exo_endo_phos (HMM E-Value=0.25)
Length = 413
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 42 HRVERKKTKGRSLTQSEKERPRTIVCKLKDWK 73
>SB_13719| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 335
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 188
>SB_13485| Best HMM Match : HSBP1 (HMM E-Value=1.4)
Length = 193
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCEIKDWK 188
>SB_2790| Best HMM Match : HSBP1 (HMM E-Value=0.15)
Length = 263
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 188
>SB_58227| Best HMM Match : HSBP1 (HMM E-Value=0.28)
Length = 565
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 188
>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 157 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 188
>SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06)
Length = 563
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR ++ K WK
Sbjct: 125 HRVERKKAKGRSLTQSEKERPRTIVCKLKDWK 156
>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 113 RSDREKPKRSTKSNERRRSPR 175
R E+P RS +S +R RSP+
Sbjct: 275 RQREEEPSRSRRSKDRSRSPQ 295
>SB_16918| Best HMM Match : Catalase-rel (HMM E-Value=7.1)
Length = 134
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 110 HRSDREKPKRSTKSNERRRSPRXVLSFSKIWK 205
HR +R+K K + + + PR V K WK
Sbjct: 53 HRVERKKAKGRSLTQSEKERPRTVACKLKDWK 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,425
Number of Sequences: 59808
Number of extensions: 34412
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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