Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30330.Seq
         (274 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118927-1|AAM50787.1|  374|Drosophila melanogaster LD23870p pro...    26   6.3  
AJ459409-1|CAD30680.1|  374|Drosophila melanogaster RNA-binding ...    26   6.3  
AE014297-964|AAF54396.2|  374|Drosophila melanogaster CG16788-PA...    26   6.3  

>AY118927-1|AAM50787.1|  374|Drosophila melanogaster LD23870p
           protein.
          Length = 374

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPRXV 181
           D++KP   ++S  R RSPR V
Sbjct: 109 DKDKPSARSRSRSRTRSPRRV 129


>AJ459409-1|CAD30680.1|  374|Drosophila melanogaster RNA-binding
           protein S1 protein.
          Length = 374

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPRXV 181
           D++KP   ++S  R RSPR V
Sbjct: 109 DKDKPSARSRSRSRTRSPRRV 129


>AE014297-964|AAF54396.2|  374|Drosophila melanogaster CG16788-PA
           protein.
          Length = 374

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 DREKPKRSTKSNERRRSPRXV 181
           D++KP   ++S  R RSPR V
Sbjct: 109 DKDKPSARSRSRSRTRSPRRV 129


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,184
Number of Sequences: 53049
Number of extensions: 48407
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 24,988,368
effective HSP length: 69
effective length of database: 21,327,987
effective search space used: 447887727
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)