Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30330.Seq
         (274 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    26   3.2  
U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna b...    25   5.5  

>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 110 HRSDREKPKRSTKSNERRRSP 172
           +R DR   KRS +S ERRRSP
Sbjct: 169 YRDDRRDRKRS-RSRERRRSP 188


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 110 HRSDREKPKRSTKSNERRRSP 172
           +R DR   KRS +S ERRRSP
Sbjct: 295 YRDDRRDRKRS-RSRERRRSP 314


>U00052-10|AAK21429.2|  289|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 5 protein.
          Length = 289

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 113 RSDREKPKRSTKSNERRRSP 172
           R+DR++P R + S  RRR P
Sbjct: 78  RADRDRPMRPSPSPPRRRRP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,827
Number of Sequences: 27780
Number of extensions: 27054
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)