Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30330.Seq
         (274 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00750.1 68417.m00102 dehydration-responsive family protein s...    25   5.4  
At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme ...    25   5.4  
At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical ...    25   7.2  

>At4g00750.1 68417.m00102 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 172 RGSSSLITFSAPFRL-FPIRAMRLFSCARC 86
           RG  ++I   A  RL FP RA  +  C+RC
Sbjct: 261 RGVPAIIGVLASIRLPFPARAFDIAHCSRC 290


>At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme
           oxygenase 3 [Arabidopsis thaliana]
           gi|14485563|gb|AAK63006
          Length = 285

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 123 GKSLKGALKVMSEDDPLEXCCHF 191
           GK+    LK ++E+DP    CHF
Sbjct: 180 GKTYSEYLKDLAENDPQAFICHF 202


>At2g26670.1 68415.m03199 heme oxygenase 1 (HO1) (HY1) identical to
           plastid heme oxygenase (HY1) [Arabidopsis thaliana]
           GI:4877362, heme oxygenase 1 [Arabidopsis thaliana]
           GI:4530591 GB:AF132475; annotation updated per Seth J.
           Davis at University of Wisconsin-Madison
          Length = 282

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 123 GKSLKGALKVMSEDDPLEXCCHF 191
           GK+    LK ++E DP    CHF
Sbjct: 177 GKTYSQYLKELAEKDPQAFICHF 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,435
Number of Sequences: 28952
Number of extensions: 24720
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 222240128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)